Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   J444_RS21360 Genome accession   NZ_CP007442
Coordinates   4325732..4326757 (-) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli ACN001     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4320732..4331757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J444_RS21330 (J444_4281) zapB 4320816..4321061 (+) 246 WP_001296623.1 septal ring assembly protein ZapB -
  J444_RS21335 (J444_4282) rraA 4321146..4321631 (-) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  J444_RS21340 (J444_4283) menA 4321724..4322650 (-) 927 WP_000139496.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  J444_RS21345 (J444_4284) hslU 4322717..4324048 (-) 1332 WP_001293341.1 HslU--HslV peptidase ATPase subunit -
  J444_RS21350 (J444_4285) hslV 4324058..4324588 (-) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  J444_RS21355 (J444_4286) ftsN 4324681..4325640 (-) 960 WP_000068837.1 cell division protein FtsN -
  J444_RS21360 (J444_4288) cytR 4325732..4326757 (-) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  J444_RS21365 (J444_4289) priA 4326913..4329111 (-) 2199 WP_001324365.1 primosomal protein N' Machinery gene
  J444_RS21370 (J444_4290) rpmE 4329314..4329526 (+) 213 WP_000710769.1 50S ribosomal protein L31 -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=104503 J444_RS21360 WP_000644904.1 4325732..4326757(-) (cytR) [Escherichia coli ACN001]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=104503 J444_RS21360 WP_000644904.1 4325732..4326757(-) (cytR) [Escherichia coli ACN001]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAACCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGATCCC
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGCTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTGCCTACCGTTCATATCGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCACTGTGTCACTACCGCCTGCAAGGCTATGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCGATGCAGCAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGCGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628

Multiple sequence alignment