Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACEPSQ_RS12240 Genome accession   NZ_CP168685
Coordinates   2574183..2574752 (-) Length   189 a.a.
NCBI ID   WP_020090297.1    Uniprot ID   A0A0R1GV20
Organism   Levilactobacillus parabrevis strain FUA 30083     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2569183..2579752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSQ_RS12225 - 2569462..2572764 (-) 3303 WP_395322093.1 DUF5107 domain-containing protein -
  ACEPSQ_RS12230 - 2572930..2573796 (+) 867 WP_395322091.1 helix-turn-helix domain-containing protein -
  ACEPSQ_RS12235 rpsR 2573918..2574154 (-) 237 WP_011666824.1 30S ribosomal protein S18 -
  ACEPSQ_RS12240 ssb 2574183..2574752 (-) 570 WP_020090297.1 single-stranded DNA-binding protein Machinery gene
  ACEPSQ_RS12245 rpsF 2574794..2575090 (-) 297 WP_020090298.1 30S ribosomal protein S6 -
  ACEPSQ_RS12250 - 2575407..2575532 (-) 126 WP_260346626.1 hypothetical protein -
  ACEPSQ_RS12255 - 2575551..2576402 (-) 852 WP_260338615.1 helix-turn-helix domain-containing protein -
  ACEPSQ_RS12260 - 2576710..2578692 (-) 1983 WP_395322086.1 BspA family leucine-rich repeat surface protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20516.10 Da        Isoelectric Point: 4.9264

>NTDB_id=1044968 ACEPSQ_RS12240 WP_020090297.1 2574183..2574752(-) (ssb) [Levilactobacillus parabrevis strain FUA 30083]
MINRVVLTGRLTRDVDLRYTQGGAAVATFTLAVDRRFTNKSGEREADFVSCVIWRKSAENFANFFHKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVEDFSFLEPRSRNANNNGGNANYGGNPANNAPQQNQNQNANPFTSGNPSPAAPSQNSNPAPSNN
NGNNAGNNSADPFANTGDSIDISDDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1044968 ACEPSQ_RS12240 WP_020090297.1 2574183..2574752(-) (ssb) [Levilactobacillus parabrevis strain FUA 30083]
ATGATCAACCGAGTAGTACTAACTGGCCGACTGACACGGGATGTTGACTTACGATACACCCAAGGCGGTGCTGCTGTTGC
CACGTTTACCTTGGCCGTTGATCGGCGGTTCACCAACAAATCTGGTGAACGGGAAGCTGATTTCGTAAGTTGTGTCATTT
GGCGCAAGTCCGCGGAAAACTTTGCGAACTTTTTCCACAAGGGTTCCCTTGTTGGAATTGAAGGTCGGATTCAGACCCGG
AATTACGAAAATCAACAGGGCCAACGGGTTTATGTTACCGAAGTTGTTGTCGAGGACTTTTCGTTCCTCGAACCACGTTC
TCGTAACGCGAACAACAATGGTGGTAACGCAAACTACGGCGGTAACCCAGCGAATAATGCTCCTCAACAGAATCAGAATC
AAAATGCCAATCCATTTACGAGTGGGAACCCGTCTCCGGCGGCCCCATCGCAAAACTCGAATCCAGCCCCAAGTAACAAC
AACGGCAACAATGCTGGGAACAACTCAGCTGATCCGTTTGCGAACACCGGCGATTCAATTGACATTTCCGATGATGATTT
ACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0R1GV20

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.733

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.789

100

0.561

Multiple sequence alignment