Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACEO96_RS18210 Genome accession   NZ_CP168658
Coordinates   914008..915189 (-) Length   393 a.a.
NCBI ID   WP_194567949.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   induction of competence (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 911278..916349 914008..915189 within 0


Gene organization within MGE regions


Location: 911278..916349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS18200 (ACEO96_18200) - 911278..912309 (-) 1032 WP_213972059.1 IS630 family transposase -
  ACEO96_RS18205 (ACEO96_18205) cqsS 912401..913921 (+) 1521 WP_373433448.1 response regulator Regulator
  ACEO96_RS18210 (ACEO96_18210) cqsA 914008..915189 (-) 1182 WP_194567949.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACEO96_RS18215 (ACEO96_18215) - 915318..916349 (-) 1032 WP_213972059.1 IS630 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43555.41 Da        Isoelectric Point: 6.7301

>NTDB_id=1044846 ACEO96_RS18210 WP_194567949.1 914008..915189(-) (cqsA) [Vibrio anguillarum strain VA1]
MNSRKWKHELPASIQSRIDYFINDLINANANGKHLVLGKRPTKNDIVLQSNDYLSLADHPLIKARLKNAIDKTHDSVFMS
AIFLQDEESKPSLETKFAEFVGFDSCLLSQSGWNANTALLQAVCGPQSNVYIDFFAHMSMWEGARYANANIHPFMHNNCD
HLQKLIARHGPGLIVVDSIYSTIGTIAPLTDLVTIAKEYGCAILVDESHSLGTHGEKGAGLVSELGLTAEVDFITASLAK
TFAYRAGAIWANNNVNHCIPFVGYPAIFSSTILPYEVEALEATLDIIKSADSKRIRLHRNAHTLRRGLNSIGLSVRSESQ
IIALETGDERNTEKVRDYLEDNQIFGAVFCRPATSKNKNIIRLSLNSNVTDSQIDTILTVCERAQNDSSLYFK

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1044846 ACEO96_RS18210 WP_194567949.1 914008..915189(-) (cqsA) [Vibrio anguillarum strain VA1]
ATGAATTCACGTAAGTGGAAACACGAACTACCGGCTTCTATACAATCTAGAATTGACTATTTTATCAATGATTTGATTAA
TGCAAATGCTAACGGAAAACACCTAGTCCTGGGGAAAAGGCCAACAAAAAACGACATAGTGTTACAAAGTAATGATTATT
TAAGCTTGGCTGATCATCCATTAATTAAAGCACGGTTGAAAAACGCCATCGATAAAACACATGATAGTGTTTTTATGTCC
GCTATTTTTCTACAAGATGAAGAGTCTAAACCTTCATTAGAAACGAAATTTGCAGAATTTGTAGGCTTTGATAGTTGCCT
TCTTTCTCAATCAGGATGGAATGCTAATACAGCCTTGTTGCAAGCTGTGTGCGGGCCACAAAGTAACGTCTACATTGACT
TTTTTGCTCACATGTCAATGTGGGAAGGTGCTCGCTATGCTAATGCCAATATTCACCCATTCATGCACAATAATTGTGAT
CATTTGCAAAAACTGATCGCTCGACACGGCCCAGGGCTCATTGTGGTTGATTCGATTTACAGCACTATAGGTACGATTGC
ACCACTCACCGATTTGGTCACTATCGCCAAAGAGTATGGATGCGCCATTTTAGTTGATGAGTCGCATTCACTTGGCACAC
ATGGCGAAAAAGGTGCAGGACTTGTCAGTGAATTAGGGTTAACAGCAGAGGTTGACTTTATTACAGCTAGCCTTGCGAAA
ACGTTCGCGTATCGCGCTGGCGCTATTTGGGCGAATAATAATGTGAATCACTGTATCCCTTTTGTGGGTTATCCCGCTAT
TTTTAGTTCAACTATTTTGCCTTATGAAGTCGAAGCGTTAGAAGCGACATTAGACATTATCAAATCAGCCGATTCTAAAA
GAATTCGGTTGCACCGTAATGCACACACACTGCGTCGTGGACTAAATAGTATAGGGCTAAGCGTACGAAGTGAGTCCCAA
ATCATCGCGCTAGAAACAGGAGATGAGCGAAATACAGAAAAAGTTCGCGATTATTTAGAAGACAACCAAATATTTGGTGC
TGTTTTTTGCAGGCCTGCCACTTCAAAGAATAAAAACATTATTCGGCTTTCGTTAAATAGTAATGTCACTGATTCACAAA
TTGATACCATATTAACCGTGTGTGAAAGGGCCCAAAATGATAGCAGTCTCTATTTCAAGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(44-378)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

68.734

98.473

0.677

Multiple sequence alignment