Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   ACEO96_RS15495 Genome accession   NZ_CP168658
Coordinates   255033..256133 (-) Length   366 a.a.
NCBI ID   WP_373433571.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 250033..261133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS15480 (ACEO96_15480) - 250700..250948 (-) 249 Protein_233 response regulator -
  ACEO96_RS15485 (ACEO96_15485) - 250961..252574 (-) 1614 WP_161749674.1 IS1634 family transposase -
  ACEO96_RS15490 (ACEO96_15490) luxQ 252642..255017 (-) 2376 WP_373433570.1 LuxQ periplasmic sensor domain-containing protein Regulator
  ACEO96_RS15495 (ACEO96_15495) luxP 255033..256133 (-) 1101 WP_373433571.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACEO96_RS15500 (ACEO96_15500) - 256358..257509 (-) 1152 WP_373433572.1 conjugal transfer protein TraF -
  ACEO96_RS15505 (ACEO96_15505) - 257605..257928 (-) 324 WP_094164912.1 GIY-YIG nuclease family protein -
  ACEO96_RS15510 (ACEO96_15510) - 257929..258582 (-) 654 WP_170899235.1 YceH family protein -
  ACEO96_RS15515 (ACEO96_15515) - 258640..258843 (-) 204 WP_026028336.1 hypothetical protein -
  ACEO96_RS15520 (ACEO96_15520) - 259034..259351 (+) 318 WP_010319897.1 DUF496 family protein -
  ACEO96_RS15525 (ACEO96_15525) - 259659..259910 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 41654.23 Da        Isoelectric Point: 5.9885

>NTDB_id=1044843 ACEO96_RS15495 WP_373433571.1 255033..256133(-) (luxP) [Vibrio anguillarum strain VA1]
MRKILLLSFVFSVSLAASTQAAAQVLNGYWRYQEFLDLHPAQQALTDQMIQAVRQPPAVLSIEQDKPIHISVVYPGQQVS
DYWARNIKAFEMRLDELGIRYQINQVFTRPNVDIRQQSLSLMEAIRNKSDYLVFTLDTIRHRKFIEQLLSSNQTKIILQN
ITTPVKSWGDRQPFMYVGFDHEIGTMKLVDYYKKSAPKNSAYSVLYYSEGYVSDARGDSFIQEMSRDSKYHLASSFYTKA
TRDSAFDATLRILKQTPDINFIYACSTDVALGAMDALQQQNREDITLNGWGGGEAELDALQNSTLDVTIMRVNDDAGVAM
AEAIKWDLEGKPVPTVYSGDFELVTKEVSSADIEKLKKRAFRYSDH

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=1044843 ACEO96_RS15495 WP_373433571.1 255033..256133(-) (luxP) [Vibrio anguillarum strain VA1]
ATGAGAAAAATCCTGCTCCTTTCATTTGTGTTCAGTGTCAGTTTGGCAGCCTCCACTCAGGCTGCAGCGCAAGTTTTAAA
TGGTTATTGGCGATATCAAGAGTTTTTAGATCTTCATCCTGCGCAACAGGCTCTTACCGACCAGATGATACAGGCAGTGC
GTCAACCTCCCGCTGTACTCTCAATAGAGCAAGATAAACCTATTCATATTTCTGTTGTTTATCCAGGTCAACAAGTTTCC
GATTATTGGGCGCGCAATATCAAAGCCTTTGAGATGCGTTTAGACGAACTTGGGATTAGATACCAAATTAACCAAGTCTT
CACTCGTCCGAATGTCGATATTCGCCAACAAAGTTTATCGTTGATGGAAGCGATCAGAAACAAATCCGATTACTTGGTGT
TTACGCTTGATACCATCCGCCACCGTAAATTTATCGAGCAGTTGTTAAGTTCAAATCAAACCAAAATTATTCTGCAAAAT
ATCACTACGCCGGTAAAAAGTTGGGGAGATCGCCAGCCTTTTATGTACGTGGGGTTTGATCATGAAATTGGCACAATGAA
ACTGGTGGATTACTACAAAAAGTCGGCGCCAAAGAATAGTGCTTATTCCGTACTCTATTATTCTGAAGGCTATGTTAGCG
ATGCTCGCGGTGATAGTTTTATCCAAGAAATGAGTCGAGACAGCAAATATCACTTGGCCTCTTCGTTTTATACAAAAGCG
ACACGAGATAGTGCATTTGATGCAACTTTGCGTATTCTTAAACAAACACCAGATATTAATTTTATTTACGCATGCTCTAC
TGATGTTGCTCTCGGTGCCATGGATGCGTTGCAGCAGCAAAATAGAGAAGATATTACGTTAAACGGCTGGGGCGGTGGTG
AGGCTGAATTGGACGCGCTGCAAAATAGCACACTTGATGTGACTATCATGCGTGTCAATGATGATGCCGGTGTTGCTATG
GCGGAAGCCATTAAGTGGGATCTTGAAGGAAAGCCGGTACCTACGGTTTACTCAGGTGATTTTGAGTTGGTAACCAAAGA
GGTCTCTTCAGCGGATATTGAAAAGCTCAAAAAACGAGCATTTCGTTACTCTGACCATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(70-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.889

98.361

0.628

Multiple sequence alignment