Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxQ   Type   Regulator
Locus tag   ACEO96_RS15490 Genome accession   NZ_CP168658
Coordinates   252642..255017 (-) Length   791 a.a.
NCBI ID   WP_373433570.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 247642..260017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS15470 (ACEO96_15470) glpD 248329..249873 (+) 1545 WP_019282224.1 glycerol-3-phosphate dehydrogenase -
  ACEO96_RS15475 (ACEO96_15475) - 250017..250682 (+) 666 WP_019282225.1 flagellar brake protein -
  ACEO96_RS15480 (ACEO96_15480) - 250700..250948 (-) 249 Protein_233 response regulator -
  ACEO96_RS15485 (ACEO96_15485) - 250961..252574 (-) 1614 WP_161749674.1 IS1634 family transposase -
  ACEO96_RS15490 (ACEO96_15490) luxQ 252642..255017 (-) 2376 WP_373433570.1 LuxQ periplasmic sensor domain-containing protein Regulator
  ACEO96_RS15495 (ACEO96_15495) luxP 255033..256133 (-) 1101 WP_373433571.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACEO96_RS15500 (ACEO96_15500) - 256358..257509 (-) 1152 WP_373433572.1 conjugal transfer protein TraF -
  ACEO96_RS15505 (ACEO96_15505) - 257605..257928 (-) 324 WP_094164912.1 GIY-YIG nuclease family protein -
  ACEO96_RS15510 (ACEO96_15510) - 257929..258582 (-) 654 WP_170899235.1 YceH family protein -
  ACEO96_RS15515 (ACEO96_15515) - 258640..258843 (-) 204 WP_026028336.1 hypothetical protein -
  ACEO96_RS15520 (ACEO96_15520) - 259034..259351 (+) 318 WP_010319897.1 DUF496 family protein -
  ACEO96_RS15525 (ACEO96_15525) - 259659..259910 (+) 252 WP_013867916.1 YgjV family protein -

Sequence

Protein


Download         Length: 791 a.a.        Molecular weight: 89703.40 Da        Isoelectric Point: 5.0611

>NTDB_id=1044842 ACEO96_RS15490 WP_373433570.1 252642..255017(-) (luxQ) [Vibrio anguillarum strain VA1]
MSLRSSTVKKKQKIATVITKSMIAVIGALTLSVLFQSYQISSKIIAQEVQRTASQTSSLIQNLFNFRLSLLQINQDSSAK
NAGLVKAIRKGDNDSIDQFFFGVDQLEVANTPDIRFISDSDSLMWEDGNAQFYGIEQNELVNMSRKVALSNNWHMIKSPS
QLGYAYLMVRRTPVIDSQSGEVIGFLHLATVLNNNYVLAETLREGSNSENLVMTTGEKVLASTINGDETYTERDVLEDNF
DAYSFADYMVSRTALTIEGVPIYINVLSVQSNENVLQLRENYFFWMIFALFAMVIVSILTRWWLQQRVKNEISSLMNYTH
KAAEAGSYELFSGSKIYEFDHFGRTLEHTFQRLSEQEKQFEDLFNFSLSPIIVWSIDGDIIKMNPSAKKYFMRRNDQQQC
ILDALKQELQPKIRLAVEQETFREINVEVGNKVFRWNLSPIIFEQRIESIITQGQDITTIAEAAKQSRLARQEAEESARI
RAEFLAKMSHELRTPLNGILGVSQLLKREISDHEQLEQVNVLCSSGEHLLAVLNDILDFSKIEQGQFRIQESDFKLVEVI
SAVESIYRPLCAEKEIEFSLKSNIPPDMMIHSDQVRLNQILFNLLNNATKFTHHGLISIEFQQKNNHQLFISISDTGIGI
REQDLALIFEPFTQVESNTTREYGGSGLGLAIVKSLIEMLGGAVNVKSQFGVGTTFSVELPLVVVSDCGKDIPSYERAPP
HEMFEKPIKVLLVEDNHTNAFIAQAFCKKYGMEVTRVEDGLQAIDYVKDHPVIPQPISELKQCDPVIVYKC

Nucleotide


Download         Length: 2376 bp        

>NTDB_id=1044842 ACEO96_RS15490 WP_373433570.1 252642..255017(-) (luxQ) [Vibrio anguillarum strain VA1]
ATGAGTTTAAGGTCAAGCACCGTCAAGAAAAAACAAAAGATAGCTACCGTGATCACCAAATCAATGATTGCGGTGATTGG
CGCATTGACGCTCAGCGTTTTATTTCAAAGTTATCAGATCAGTAGCAAAATCATTGCTCAAGAAGTGCAACGTACGGCTT
CTCAAACCTCTAGTCTCATCCAGAACCTCTTTAACTTCCGTCTTTCATTACTGCAGATAAACCAAGATAGCAGCGCAAAA
AATGCAGGTTTAGTTAAAGCAATTCGTAAGGGCGATAATGACAGCATTGATCAGTTCTTTTTTGGAGTTGACCAGCTAGA
AGTAGCCAACACACCTGACATTCGTTTCATTTCTGATTCTGACAGCCTGATGTGGGAAGATGGCAATGCTCAGTTTTATG
GTATTGAACAAAACGAGCTGGTAAACATGTCTCGTAAAGTCGCGTTAAGTAATAACTGGCATATGATCAAATCGCCCTCT
CAATTGGGCTATGCCTACCTAATGGTCAGACGTACTCCCGTGATTGACTCGCAGTCCGGAGAGGTGATTGGTTTTTTGCA
TCTTGCTACCGTACTTAACAACAATTACGTGCTGGCAGAAACATTACGTGAAGGGAGTAACTCAGAAAATCTCGTGATGA
CGACGGGTGAAAAGGTCTTAGCCTCAACAATTAATGGTGATGAGACCTACACGGAACGTGATGTTTTAGAAGATAATTTT
GACGCCTATAGTTTTGCCGATTACATGGTAAGCCGTACCGCGTTAACCATAGAAGGCGTACCAATTTATATTAACGTCCT
CAGTGTGCAGAGCAATGAGAACGTATTGCAATTACGTGAAAATTATTTTTTTTGGATGATTTTTGCCCTTTTTGCGATGG
TGATAGTCTCTATTTTGACTCGTTGGTGGTTACAGCAGCGTGTCAAAAATGAAATCAGTAGCTTGATGAATTACACCCAC
AAAGCTGCAGAAGCTGGGAGTTATGAGCTTTTTTCTGGTTCTAAAATCTATGAATTTGATCACTTCGGCAGAACGCTAGA
ACACACATTTCAACGTTTATCTGAGCAAGAAAAACAATTTGAAGATCTGTTCAATTTTTCACTTTCGCCCATCATAGTAT
GGAGTATCGACGGTGATATCATCAAAATGAACCCATCAGCAAAGAAATATTTCATGCGTCGCAATGATCAACAGCAGTGC
ATTCTTGATGCATTAAAGCAAGAACTGCAGCCAAAGATACGCCTTGCGGTTGAACAAGAAACGTTCCGAGAGATAAACGT
TGAAGTTGGCAACAAGGTTTTCCGCTGGAATTTATCGCCCATTATTTTTGAGCAGAGAATTGAGTCAATCATCACTCAAG
GACAAGATATTACGACAATCGCTGAGGCGGCCAAACAGAGCCGACTCGCAAGACAAGAAGCGGAAGAGTCGGCGCGTATT
CGTGCTGAATTTCTTGCAAAAATGAGTCATGAGCTGAGAACACCATTGAATGGAATTTTAGGGGTCTCTCAATTACTTAA
GCGTGAAATCAGTGACCATGAGCAACTTGAACAAGTGAATGTGTTATGCAGCAGTGGTGAACATTTATTGGCGGTACTGA
ATGATATCCTTGATTTTTCAAAGATAGAGCAGGGACAGTTTAGAATTCAAGAGTCTGACTTTAAGCTGGTTGAGGTCATC
TCTGCCGTGGAAAGTATCTATCGGCCATTATGTGCCGAAAAAGAGATTGAGTTCAGCCTAAAGAGCAATATTCCGCCTGA
TATGATGATCCATAGCGATCAAGTTCGCCTGAACCAAATTCTGTTTAATTTATTAAATAATGCGACTAAGTTTACCCATC
ATGGGTTGATTAGCATTGAGTTCCAGCAAAAGAATAACCACCAATTGTTTATTTCGATTAGTGATACAGGTATCGGCATC
AGAGAGCAAGATCTCGCGCTTATTTTTGAGCCTTTTACTCAAGTAGAATCAAACACCACACGAGAATACGGCGGTAGTGG
TTTGGGGCTTGCGATTGTCAAAAGCTTAATTGAGATGCTTGGTGGTGCCGTAAACGTGAAAAGCCAATTTGGAGTAGGTA
CTACATTTTCTGTTGAACTCCCGCTGGTTGTCGTCAGTGACTGCGGGAAGGATATACCATCTTATGAGCGCGCGCCGCCA
CATGAAATGTTTGAAAAACCAATCAAAGTGTTGCTAGTCGAAGATAATCATACCAACGCTTTTATTGCTCAAGCATTTTG
CAAAAAATACGGTATGGAAGTGACAAGAGTAGAGGATGGTCTACAGGCGATTGATTATGTGAAAGATCATCCCGTCATTC
CGCAGCCAATTTCAGAATTAAAACAATGTGATCCAGTGATCGTTTACAAATGTTAG

Domains

Predicted by InterProScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(481-545)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(593-702)

LuxQ, periplasmic (LuxQ-periplasm)

(41-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

56.129

97.977

0.55

Multiple sequence alignment