Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACCB35_RS14405 Genome accession   NZ_CP168654
Coordinates   2844188..2845897 (-) Length   569 a.a.
NCBI ID   WP_374054266.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2839188..2850897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS14380 - 2840084..2840323 (+) 240 WP_044340058.1 DUF2627 domain-containing protein -
  ACCB35_RS14385 - 2840337..2841071 (-) 735 WP_374054264.1 glycerophosphodiester phosphodiesterase -
  ACCB35_RS14390 - 2841254..2841517 (+) 264 WP_374054265.1 hypothetical protein -
  ACCB35_RS14395 spo0A 2841682..2842460 (-) 779 Protein_2795 sporulation transcription factor Spo0A -
  ACCB35_RS14400 spoIVB 2842773..2844062 (-) 1290 WP_044340054.1 SpoIVB peptidase -
  ACCB35_RS14405 recN 2844188..2845897 (-) 1710 WP_374054266.1 DNA repair protein RecN Machinery gene
  ACCB35_RS14410 ahrC 2846015..2846464 (-) 450 WP_044340153.1 transcriptional regulator AhrC/ArgR -
  ACCB35_RS14415 - 2847034..2847870 (-) 837 WP_374057032.1 TlyA family RNA methyltransferase -
  ACCB35_RS14420 dxs 2847873..2849765 (-) 1893 WP_374054267.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACCB35_RS14425 - 2849787..2850419 (-) 633 WP_044340050.1 hypothetical protein -

Sequence

Protein


Download         Length: 569 a.a.        Molecular weight: 64137.99 Da        Isoelectric Point: 5.1437

>NTDB_id=1044777 ACCB35_RS14405 WP_374054266.1 2844188..2845897(-) (recN) [Rossellomorea sp. FM04394]
MLQELSIKNFAIIESLSLSFEEGLTVLSGETGAGKSIIIDAIHLLVGGRGSSEYVRHGEKKAEIEGLFILDNETHPCIEK
AASFGIEIEEGMIILRRDISSSGKSVCRINGKLVTIAIMREIGASLIDIHGQHEHQELMNDSLHLSLLDQFGGKEIASGL
SSYGEVYKEYLSIYKQLNRLNENEQEMAHRLDLIQFQLNEIHDANLQLNEDDELQEEKRKLMNFEKLFEALQTSYDSIQG
ERKGLDWAGLAMSHLETAAEVDSQYEKTLESVSNAFYMLEDAAHQVRGELDQLEFEPNRLDLIEARLNEINGLKRKYGSS
VEEILAYSSKIEEEIETIMNKDSHVEHLQSKLQSLEKDLSLEAKNLSQTRKQWAKKLTASIHEQLKQLYMDKTKFEVRFV
KSGENESFSFQHFKKDGWDTVEFYISTNPGEPLKPLSKVASGGELSRIMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQ
AIAEKIYQVAIHSQVMCISHLPQVAAMADCHLFISKKLSGGRTSTMVKRLQEKEKIKEISRMISGVEITDLTLEHAKELL
QLAGSIKET

Nucleotide


Download         Length: 1710 bp        

>NTDB_id=1044777 ACCB35_RS14405 WP_374054266.1 2844188..2845897(-) (recN) [Rossellomorea sp. FM04394]
TTGCTACAAGAACTATCAATCAAAAATTTCGCCATAATTGAATCCCTCTCTCTCTCCTTTGAAGAAGGACTGACCGTTTT
GTCAGGTGAGACCGGAGCAGGTAAGTCGATTATCATTGATGCCATTCATTTACTGGTTGGTGGAAGAGGATCCTCAGAAT
ACGTGCGGCATGGGGAGAAAAAGGCTGAAATTGAAGGGTTATTTATTCTTGATAATGAAACTCATCCATGCATTGAGAAA
GCAGCGAGCTTCGGGATAGAAATCGAGGAAGGAATGATCATTCTTCGAAGGGATATTTCGAGCAGTGGAAAAAGTGTTTG
CAGAATCAATGGCAAGCTCGTGACGATTGCGATCATGAGGGAAATCGGGGCTTCGCTCATTGATATACATGGACAGCATG
AGCATCAAGAACTGATGAATGATAGCCTTCACCTCTCCTTATTGGATCAATTCGGAGGGAAAGAGATTGCTTCTGGTCTC
TCAAGTTACGGGGAAGTATATAAAGAGTATCTTTCTATTTATAAGCAGCTTAACAGGCTTAATGAGAACGAGCAGGAGAT
GGCACATCGTTTGGATCTGATTCAGTTTCAGCTGAATGAAATTCATGATGCAAACCTTCAATTAAACGAAGATGATGAGC
TACAAGAAGAGAAAAGGAAACTTATGAACTTTGAAAAGCTTTTTGAGGCGCTGCAGACCTCCTATGACAGTATTCAAGGT
GAGAGAAAAGGGCTGGACTGGGCGGGGCTAGCCATGAGTCATCTCGAGACAGCTGCAGAAGTTGATTCTCAATATGAAAA
GACTTTGGAATCTGTTTCAAATGCTTTCTATATGCTTGAAGATGCCGCTCATCAAGTGAGGGGAGAATTAGATCAATTGG
AATTTGAGCCAAACCGTTTGGATCTTATTGAGGCGAGACTGAATGAGATCAACGGTCTAAAGAGAAAGTATGGGTCTTCT
GTAGAAGAAATCCTGGCTTATAGTTCAAAGATTGAAGAAGAAATTGAAACCATCATGAACAAAGATTCTCATGTAGAACA
TTTACAGAGTAAATTACAATCACTTGAGAAAGATTTATCATTAGAGGCAAAAAATCTGTCCCAAACGAGAAAGCAGTGGG
CGAAAAAATTAACAGCAAGTATTCATGAACAGCTTAAGCAACTTTATATGGATAAAACGAAATTTGAAGTTCGCTTTGTG
AAAAGTGGAGAAAATGAATCGTTTTCCTTTCAGCATTTTAAAAAGGATGGTTGGGACACAGTGGAGTTTTACATATCCAC
CAATCCAGGGGAGCCTTTAAAGCCGTTATCCAAAGTTGCTTCAGGTGGGGAGCTTTCCCGTATTATGCTGGCCATGAAGA
CGATTTTTTCCAAGCACCAGGGAATTACCTCCATCATTTTTGATGAGGTCGATACAGGAGTCAGCGGAAGAGTGGCACAG
GCGATTGCTGAAAAAATTTACCAGGTTGCCATTCATTCCCAGGTAATGTGTATATCTCACTTACCGCAAGTAGCTGCAAT
GGCAGATTGTCACCTGTTTATTTCGAAAAAACTTTCAGGCGGAAGAACGAGCACAATGGTCAAACGTCTTCAAGAGAAGG
AAAAGATCAAAGAAATCTCCAGAATGATTTCGGGAGTGGAAATTACAGATTTAACATTAGAACACGCAAAGGAATTACTG
CAATTAGCAGGATCCATAAAAGAAACATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.111

100

0.619

Multiple sequence alignment