Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACCB35_RS07760 Genome accession   NZ_CP168654
Coordinates   1548889..1550712 (+) Length   607 a.a.
NCBI ID   WP_374056431.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1543889..1555712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS07740 spxA 1544520..1544915 (+) 396 WP_032089161.1 transcriptional regulator SpxA -
  ACCB35_RS07745 mecA 1545272..1545943 (+) 672 WP_044337683.1 adaptor protein MecA -
  ACCB35_RS07750 cls 1546019..1547524 (+) 1506 WP_374056429.1 cardiolipin synthase -
  ACCB35_RS07755 - 1547613..1548800 (+) 1188 WP_374056430.1 competence protein CoiA -
  ACCB35_RS07760 pepF 1548889..1550712 (+) 1824 WP_374056431.1 oligoendopeptidase F Regulator
  ACCB35_RS07765 - 1550813..1551001 (-) 189 WP_052504431.1 hypothetical protein -
  ACCB35_RS07770 - 1551286..1552152 (-) 867 WP_253275471.1 ClpXP adapter SpxH family protein -
  ACCB35_RS07775 - 1552145..1552546 (-) 402 WP_374056432.1 globin -
  ACCB35_RS07780 - 1552819..1553463 (-) 645 WP_374056433.1 lytic transglycosylase domain-containing protein -
  ACCB35_RS07785 - 1553516..1554097 (-) 582 WP_374056434.1 CYTH domain-containing protein -
  ACCB35_RS07790 - 1554778..1555152 (+) 375 WP_374056435.1 hypothetical protein -

Sequence

Protein


Download         Length: 607 a.a.        Molecular weight: 70233.66 Da        Isoelectric Point: 4.6965

>NTDB_id=1044769 ACCB35_RS07760 WP_374056431.1 1548889..1550712(+) (pepF) [Rossellomorea sp. FM04394]
MSKDTAVKSLPGRKEVEEKLTWRLEDIFENDEAWEKEYKEIKELTGNADEFKGTLGESADQLYKAFAFQDEIMERMGKVY
TYSHMRYDQDTTNSYYQGLDDRAKSLYTQLGSKFAYLVPEVLSIEESKLQGFLDKKEELKKYKHALEEINLQRPHVLSAE
EEALLAQASEVFSAASNTFGMLNNADLEFPSIKDENGEEVDITHGRFIRFLESGDRRVREEAFKKVYETYGKFENTFAST
LSGAVKKDNFVANVRHYDSARHAALSNNNIPEQVYDNLVDTVNKNLHLLQRYVKLRKKVLGLDEVHMYDLYTPLVKEVKM
DISYDEAQDMILDGLKPLGDEYANVLKEGFDNRWVDVVENKGKRSGAYSSGAYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKAQPYTYGHYSIFVAEVASTCNEALLNDFLLNTIDDEKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHKKAQ
EGEALTSEFLTKEYYELNKKYFGEDISIDEEIGLEWARIPHFYYNYYVYQYATGFSAATALSQQILEEGEPAVERYIDFL
KAGSSDYPIEVLKKAGVDMTTSKPVEDACKVFEEKLNEMEELLEKLQ

Nucleotide


Download         Length: 1824 bp        

>NTDB_id=1044769 ACCB35_RS07760 WP_374056431.1 1548889..1550712(+) (pepF) [Rossellomorea sp. FM04394]
ATGTCAAAAGATACAGCTGTGAAAAGTCTGCCTGGTAGAAAAGAGGTAGAAGAAAAGTTAACGTGGAGATTGGAAGATAT
ATTTGAAAATGATGAAGCGTGGGAAAAAGAATATAAAGAGATAAAAGAATTGACCGGCAATGCAGACGAGTTCAAAGGAA
CTTTAGGGGAGAGTGCAGATCAGTTATATAAAGCATTTGCCTTTCAGGATGAAATTATGGAACGTATGGGTAAGGTGTAT
ACATATTCTCATATGCGCTATGATCAGGATACAACGAATTCGTACTATCAGGGTCTCGATGACCGTGCCAAAAGTCTTTA
TACACAATTAGGAAGTAAATTTGCATATTTAGTGCCCGAAGTGCTATCAATTGAGGAAAGTAAGCTGCAAGGGTTTCTAG
ACAAAAAAGAAGAGCTGAAGAAATACAAGCATGCTCTAGAGGAAATTAACCTACAGCGCCCACATGTTCTATCAGCAGAG
GAAGAAGCGTTGCTTGCTCAGGCTTCTGAGGTGTTCAGTGCTGCGAGCAATACGTTTGGTATGCTGAACAATGCTGACCT
GGAGTTTCCGAGCATTAAAGATGAAAACGGAGAAGAAGTTGACATCACACATGGCCGTTTCATTCGTTTTCTGGAAAGCG
GTGATCGTCGTGTACGGGAAGAAGCGTTCAAGAAAGTATATGAAACATACGGGAAATTTGAAAATACCTTTGCCTCTACA
TTAAGTGGAGCAGTGAAGAAAGACAATTTTGTGGCAAACGTAAGACATTATGATTCAGCAAGACATGCGGCATTATCCAA
TAACAATATTCCTGAACAGGTGTATGACAACCTTGTCGATACGGTCAATAAAAACCTTCACTTGCTGCAACGGTATGTGA
AGCTTCGTAAGAAAGTATTAGGTTTGGATGAAGTTCATATGTATGACTTATATACGCCTCTTGTGAAAGAAGTCAAGATG
GATATAAGCTATGATGAAGCACAGGATATGATCCTTGATGGCTTAAAGCCTCTGGGAGATGAATATGCCAATGTCCTCAA
AGAAGGCTTTGATAATCGTTGGGTGGACGTAGTCGAGAACAAAGGAAAGAGAAGCGGGGCATACTCTTCAGGAGCATATG
GAACGAACCCGTATATCCTTATGAACTGGCAGGATAATGTCAACAATCTATTTACACTGGCTCATGAGTTCGGTCATAGT
GTGCACAGCTATTATACGCGTAAAGCCCAGCCTTACACGTATGGTCATTACTCCATCTTTGTTGCTGAAGTGGCCTCTAC
GTGTAACGAAGCGCTATTGAATGATTTTCTATTAAACACAATTGATGATGAGAAAAAGCGACTGTACCTCCTAAATCATT
ATTTAGAAGGATTCAGAGGGACTGTTTTCCGTCAAACCATGTTTGCAGAGTTTGAACATCTCATTCATAAGAAAGCACAG
GAAGGAGAAGCCCTTACATCTGAATTCTTGACGAAAGAATATTATGAATTGAATAAGAAATATTTCGGGGAAGATATTTC
GATCGATGAAGAGATTGGATTGGAATGGGCTCGAATACCTCACTTCTACTACAATTACTATGTTTATCAATATGCGACTG
GATTCTCTGCAGCGACAGCTCTCAGTCAGCAAATTCTTGAAGAAGGGGAGCCGGCGGTGGAACGCTACATCGACTTCCTG
AAAGCTGGAAGCTCTGACTACCCGATTGAAGTCCTGAAAAAAGCAGGGGTGGACATGACAACCTCCAAGCCGGTAGAAGA
CGCGTGCAAGGTCTTTGAAGAAAAGCTGAATGAAATGGAAGAACTGCTGGAGAAACTTCAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

97.694

0.491

Multiple sequence alignment