Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | AB8O77_RS11470 | Genome accession | NZ_CP168650 |
| Coordinates | 2325586..2326182 (+) | Length | 198 a.a. |
| NCBI ID | WP_012490752.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain YGRT25 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 2320586..2331182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AB8O77_RS11450 (AB8O77_11450) | gyrA | 2321087..2323708 (+) | 2622 | WP_003584054.1 | DNA gyrase subunit A | - |
| AB8O77_RS11455 (AB8O77_11455) | deoC | 2323813..2324517 (-) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| AB8O77_RS11460 (AB8O77_11460) | ssb | 2324700..2325131 (+) | 432 | WP_003568458.1 | single-stranded DNA-binding protein | - |
| AB8O77_RS11465 (AB8O77_11465) | rpsF | 2325259..2325555 (+) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| AB8O77_RS11470 (AB8O77_11470) | ssb | 2325586..2326182 (+) | 597 | WP_012490752.1 | single-stranded DNA-binding protein | Machinery gene |
| AB8O77_RS11475 (AB8O77_11475) | rpsR | 2326269..2326505 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| AB8O77_RS11480 (AB8O77_11480) | - | 2326901..2328526 (+) | 1626 | WP_014566347.1 | polysaccharide biosynthesis protein | - |
| AB8O77_RS11485 (AB8O77_11485) | - | 2329388..2330866 (+) | 1479 | WP_014566348.1 | cytochrome ubiquinol oxidase subunit I | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21112.84 Da Isoelectric Point: 4.9056
>NTDB_id=1044725 AB8O77_RS11470 WP_012490752.1 2325586..2326182(+) (ssb) [Lacticaseibacillus paracasei strain YGRT25]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEAANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEAANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=1044725 AB8O77_RS11470 WP_012490752.1 2325586..2326182(+) (ssb) [Lacticaseibacillus paracasei strain YGRT25]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAAGCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAGGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAAGCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.505 |
100 |
0.505 |