Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   AB8O74_RS11780 Genome accession   NZ_CP168648
Coordinates   2463172..2463768 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain MGL98     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2452957..2481753 2463172..2463768 within 0


Gene organization within MGE regions


Location: 2452957..2481753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O74_RS11740 (AB8O74_11740) dnaN 2452957..2454096 (+) 1140 WP_003568447.1 DNA polymerase III subunit beta -
  AB8O74_RS11745 (AB8O74_11745) yaaA 2454949..2455161 (+) 213 WP_003568449.1 S4 domain-containing protein YaaA -
  AB8O74_RS11750 (AB8O74_11750) recF 2455158..2456273 (+) 1116 WP_003572804.1 DNA replication/repair protein RecF -
  AB8O74_RS11755 (AB8O74_11755) gyrB 2456526..2458487 (+) 1962 WP_003568453.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  AB8O74_RS11760 (AB8O74_11760) gyrA 2458549..2461170 (+) 2622 WP_003581640.1 DNA gyrase subunit A -
  AB8O74_RS11765 (AB8O74_11765) deoC 2461275..2461979 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  AB8O74_RS11770 (AB8O74_11770) ssb 2462286..2462717 (+) 432 WP_373443447.1 single-stranded DNA-binding protein -
  AB8O74_RS11775 (AB8O74_11775) rpsF 2462845..2463141 (+) 297 WP_373443448.1 30S ribosomal protein S6 -
  AB8O74_RS11780 (AB8O74_11780) ssb 2463172..2463768 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  AB8O74_RS11785 (AB8O74_11785) rpsR 2463855..2464091 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  AB8O74_RS11790 (AB8O74_11790) - 2464220..2465464 (-) 1245 WP_264484785.1 ISL3 family transposase -
  AB8O74_RS11795 (AB8O74_11795) - 2465874..2466794 (-) 921 WP_003574021.1 IS30 family transposase -
  AB8O74_RS11800 (AB8O74_11800) - 2467058..2468536 (+) 1479 WP_003568469.1 cytochrome ubiquinol oxidase subunit I -
  AB8O74_RS11805 (AB8O74_11805) cydB 2468529..2469548 (+) 1020 WP_003568540.1 cytochrome d ubiquinol oxidase subunit II -
  AB8O74_RS11810 (AB8O74_11810) - 2469575..2469769 (+) 195 WP_016369325.1 hypothetical protein -
  AB8O74_RS11815 (AB8O74_11815) - 2469842..2470435 (-) 594 WP_016369326.1 TMEM175 family protein -
  AB8O74_RS11820 (AB8O74_11820) - 2470832..2471116 (-) 285 Protein_2289 hypothetical protein -
  AB8O74_RS11825 (AB8O74_11825) - 2471138..2472058 (-) 921 WP_003574021.1 IS30 family transposase -
  AB8O74_RS11830 (AB8O74_11830) - 2472484..2473404 (-) 921 WP_003574021.1 IS30 family transposase -
  AB8O74_RS11835 (AB8O74_11835) - 2473550..2473852 (-) 303 WP_016369327.1 hypothetical protein -
  AB8O74_RS11840 (AB8O74_11840) - 2474273..2475193 (+) 921 WP_003574021.1 IS30 family transposase -
  AB8O74_RS11845 (AB8O74_11845) - 2475183..2476043 (-) 861 WP_373443449.1 lysostaphin resistance A-like protein -
  AB8O74_RS11850 (AB8O74_11850) - 2476123..2476305 (-) 183 WP_003568482.1 hypothetical protein -
  AB8O74_RS11855 (AB8O74_11855) - 2476356..2476535 (-) 180 WP_003659010.1 hypothetical protein -
  AB8O74_RS11860 (AB8O74_11860) - 2477027..2478262 (-) 1236 WP_003577228.1 cell wall hydrolase P40 -
  AB8O74_RS11865 (AB8O74_11865) - 2478466..2481039 (-) 2574 WP_016372913.1 ABC transporter permease -
  AB8O74_RS11870 (AB8O74_11870) - 2481052..2481753 (-) 702 WP_003568488.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=1044694 AB8O74_RS11780 WP_003568462.1 2463172..2463768(+) (ssb) [Lacticaseibacillus paracasei strain MGL98]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1044694 AB8O74_RS11780 WP_003568462.1 2463172..2463768(+) (ssb) [Lacticaseibacillus paracasei strain MGL98]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment