Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE1441   Type   Regulator
Locus tag   R8493_RS06370 Genome accession   NZ_AP028341
Coordinates   1229253..1229903 (+) Length   216 a.a.
NCBI ID   WP_002825181.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10328     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224253..1234903
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS06350 (B10328_12430) - 1225109..1226563 (-) 1455 WP_042962573.1 MotA/TolQ/ExbB proton channel family protein -
  R8493_RS06355 (B10328_12440) fbaA 1226662..1227726 (-) 1065 WP_144584184.1 class II fructose-bisphosphate aldolase -
  R8493_RS06360 (B10328_12450) - 1227726..1228547 (-) 822 WP_215431990.1 peptidylprolyl isomerase -
  R8493_RS06365 (B10328_12460) nth 1228630..1229256 (+) 627 WP_002823002.1 endonuclease III -
  R8493_RS06370 (B10328_12470) CJE1441 1229253..1229903 (+) 651 WP_002825181.1 DNA/RNA non-specific endonuclease Regulator
  R8493_RS06375 (B10328_12480) - 1229913..1230545 (+) 633 WP_002780167.1 trimeric intracellular cation channel family protein -
  R8493_RS06380 (B10328_12490) - 1230624..1230827 (+) 204 WP_002823007.1 EexN family lipoprotein -
  R8493_RS06385 (B10328_12500) cmoA 1230847..1231551 (-) 705 WP_002823009.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8493_RS06390 (B10328_12510) - 1231555..1232391 (-) 837 WP_002831303.1 bifunctional riboflavin kinase/FAD synthetase -
  R8493_RS06395 (B10328_12520) - 1232360..1233109 (-) 750 WP_002831300.1 TlyA family RNA methyltransferase -
  R8493_RS06400 (B10328_12530) - 1233106..1234110 (-) 1005 WP_072232471.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25091.87 Da        Isoelectric Point: 9.9234

>NTDB_id=104465 R8493_RS06370 WP_002825181.1 1229253..1229903(+) (CJE1441) [Campylobacter coli strain BCH-10328]
MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFYINCYDYKLKGTKAVAYKVEASNLKEKQIKKRARFED
DTNIPKKYRSTWSDYKNSGYTRGHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
LILYGKNPKFIKNGIAIPSSYVKIIKTSRFKECYEVPNNNIQSEEINDYKISCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104465 R8493_RS06370 WP_002825181.1 1229253..1229903(+) (CJE1441) [Campylobacter coli strain BCH-10328]
ATGAAACTTATCATCTTTTTGTTGGCATTTACACTTCATGTTTTTGCTTTAGAAGCTTATAAGCCCGATAAAGATTTTGC
GCCTTATTTTAATCCTTTAAATTGCTCTGTTGTTTTGGATAAATTTTTTTATATCAATTGTTATGATTATAAACTCAAAG
GCACTAAAGCCGTAGCCTATAAAGTCGAAGCGTCCAATCTAAAAGAAAAACAGATCAAAAAACGAGCTCGCTTTGAAGAT
GACACAAATATCCCTAAAAAATACCGCAGTACTTGGAGTGATTACAAAAATAGTGGTTATACCCGAGGACATATAGCCTC
AAATGCTTCTTTTCGCTTTAGTAAAGCAGCACAAACATCGGTTTTTTTGATGAGTAATATCACTCCACAAAATGCACAAG
TTAATGCAACGGTTTGGAATGAAATCGAACAAAGAGAAAGAAGTCTTGCTTTTAAATTCCAAAGCGTTGAAGTGCTAAAT
CTAATACTTTATGGTAAAAATCCTAAATTTATTAAAAATGGCATTGCTATACCGAGTTCTTATGTTAAGATTATCAAAAC
TTCTCGGTTTAAAGAATGTTATGAAGTACCCAATAACAATATCCAGAGCGAAGAAATCAATGATTATAAAATTTCTTGCA
ATAAATTCTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(35-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE1441 Campylobacter jejuni RM1221

67.513

91.204

0.616
  CJE0566 Campylobacter jejuni RM1221

66.497

91.204

0.606

Multiple sequence alignment