Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8493_RS02955 Genome accession   NZ_AP028341
Coordinates   583959..584729 (+) Length   256 a.a.
NCBI ID   WP_052779041.1    Uniprot ID   A0A3Z9EYH9
Organism   Campylobacter coli strain BCH-10328     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 578959..589729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS02940 (B10328_05730) - 579852..581786 (-) 1935 WP_317647284.1 ribonuclease R family protein -
  R8493_RS02945 (B10328_05740) ilvC 581909..582931 (+) 1023 WP_002825340.1 ketol-acid reductoisomerase -
  R8493_RS02950 (B10328_05750) - 582935..583969 (+) 1035 WP_289872351.1 divergent polysaccharide deacetylase family protein -
  R8493_RS02955 (B10328_05760) dprA 583959..584729 (+) 771 WP_052779041.1 DNA-processing protein DprA Machinery gene
  R8493_RS02960 (B10328_05770) ruvX 584726..585106 (+) 381 WP_002792200.1 Holliday junction resolvase RuvX -
  R8493_RS02965 (B10328_05780) - 585117..585971 (+) 855 WP_370658866.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8493_RS02970 (B10328_05790) msrA 586194..586694 (-) 501 WP_002806713.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8493_RS02975 (B10328_05800) ppa 586742..587260 (-) 519 WP_002776378.1 inorganic diphosphatase -
  R8493_RS02980 (B10328_05810) - 587271..587846 (-) 576 WP_317647286.1 adenylate kinase -
  R8493_RS02985 (B10328_05820) aspS 587843..589594 (-) 1752 WP_317647287.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28789.17 Da        Isoelectric Point: 5.0727

>NTDB_id=104456 R8493_RS02955 WP_052779041.1 583959..584729(+) (dprA) [Campylobacter coli strain BCH-10328]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGAIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=104456 R8493_RS02955 WP_052779041.1 583959..584729(+) (dprA) [Campylobacter coli strain BCH-10328]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCCAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGCTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAGGGTCTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Z9EYH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment