Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACEOAC_RS04425 Genome accession   NZ_CP168558
Coordinates   943236..944726 (-) Length   496 a.a.
NCBI ID   WP_006461685.1    Uniprot ID   A0AAI9IIF6
Organism   Herbaspirillum frisingense strain CT11-119     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 938236..949726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEOAC_RS04405 (ACEOAC_04405) - 940555..941313 (+) 759 WP_077235977.1 SDR family oxidoreductase -
  ACEOAC_RS04410 (ACEOAC_04410) - 941392..941994 (-) 603 WP_006461682.1 UbiX family flavin prenyltransferase -
  ACEOAC_RS04415 (ACEOAC_04415) grxD 942030..942341 (-) 312 WP_006461683.1 Grx4 family monothiol glutaredoxin -
  ACEOAC_RS04420 (ACEOAC_04420) hpf 942715..943077 (-) 363 WP_077235974.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ACEOAC_RS04425 (ACEOAC_04425) rpoN/rpoN1 943236..944726 (-) 1491 WP_006461685.1 RNA polymerase factor sigma-54 Machinery gene
  ACEOAC_RS04430 (ACEOAC_04430) lptB 944794..945534 (-) 741 WP_006461686.1 LPS export ABC transporter ATP-binding protein -
  ACEOAC_RS04435 (ACEOAC_04435) lptA 945537..946178 (-) 642 WP_413628706.1 lipopolysaccharide transport periplasmic protein LptA -
  ACEOAC_RS04440 (ACEOAC_04440) lptC 946230..946838 (-) 609 WP_006461688.1 LPS export ABC transporter periplasmic protein LptC -
  ACEOAC_RS04445 (ACEOAC_04445) - 946835..947389 (-) 555 WP_413443526.1 KdsC family phosphatase -
  ACEOAC_RS04450 (ACEOAC_04450) - 947389..948417 (-) 1029 WP_413443527.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55074.55 Da        Isoelectric Point: 5.1177

>NTDB_id=1044534 ACEOAC_RS04425 WP_006461685.1 943236..944726(-) (rpoN/rpoN1) [Herbaspirillum frisingense strain CT11-119]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELEQILSDNPLLERLDDALDNSVRLLADGAVSSAPSTGVAEPAGD
SGNEAAPSATDGEASFDYQDNSPESGVSGESDWSFDDVARSGKSPDDDDARPQLEAHELTLREHLLEQIRVTARTHRDRA
LLELLTDALDESGYLEEPLEDILARLPEELGVDLEELSISLKLLQSLDPAGVGARSAGECLALQIRRLPKVPFVTRKLAL
RIVEDYLPLFAQRDFNKIKKALDCDDEDLREAQAVIRQCRPHPGAEFARDASDYVVPDVIVKQTKNGWQVMLNHEVMPKL
RVNAMYASALKQAKGEGSLSSQLQEAKWLIKNMRQRFDTILRVAQAIVERQRNFFSHGAVAMRPLVLREIADTLGLHEST
ISRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAENPQTPLSDSKIADMLAEQGMVVARRTVAK
YREVLKIPPVNLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=1044534 ACEOAC_RS04425 WP_006461685.1 943236..944726(-) (rpoN/rpoN1) [Herbaspirillum frisingense strain CT11-119]
ATGAAACAGTCGCTCCAGTTACGTACCTCGCAGCACCTCGCATTGACGCCGCAACTGCAGCAGTCGATCAGGCTGTTGCA
ACTGTCGACGCTGGAACTGCACCAGGAACTGGAACAGATCCTGTCCGACAATCCCCTGCTCGAACGCCTGGACGACGCTC
TCGACAATTCGGTGCGCCTGTTGGCCGATGGCGCGGTCTCTTCCGCGCCCTCCACCGGAGTGGCCGAGCCCGCTGGCGAC
AGCGGCAACGAAGCAGCGCCCTCCGCTACTGATGGCGAAGCCAGTTTCGACTATCAGGACAACAGCCCCGAGAGCGGTGT
CAGTGGCGAATCCGACTGGAGCTTCGACGACGTGGCACGCAGTGGCAAATCGCCCGACGACGACGATGCCCGCCCGCAAC
TGGAAGCGCATGAGCTGACCCTGCGCGAACACCTGCTGGAACAGATACGGGTCACCGCCCGCACACACCGCGACCGTGCG
CTGCTGGAACTGCTCACCGATGCGCTGGACGAAAGCGGTTACCTGGAGGAACCGCTGGAAGACATCCTGGCGCGCCTGCC
GGAAGAGCTGGGCGTTGACCTGGAAGAACTGTCGATCTCGCTGAAGCTGCTGCAGAGCCTGGACCCGGCCGGGGTGGGTG
CGCGCAGTGCCGGTGAATGTCTGGCACTGCAGATCCGCCGCCTGCCCAAGGTGCCCTTCGTCACCCGCAAGCTGGCCTTG
AGGATTGTCGAGGATTACCTGCCGCTGTTCGCACAGCGCGACTTCAACAAGATCAAGAAGGCTCTCGATTGCGATGACGA
GGACCTGCGCGAAGCACAGGCGGTGATCCGTCAGTGCCGTCCGCATCCGGGTGCCGAATTCGCGCGCGATGCTTCGGACT
ACGTGGTGCCGGACGTGATTGTCAAACAGACAAAGAACGGCTGGCAGGTCATGCTCAACCATGAGGTCATGCCCAAGCTG
CGCGTCAATGCAATGTATGCGAGTGCGCTCAAGCAGGCCAAGGGCGAAGGATCGCTGTCGTCGCAGTTGCAGGAAGCTAA
GTGGCTCATCAAGAACATGCGGCAACGTTTCGATACAATTTTGCGAGTCGCGCAGGCTATTGTCGAACGTCAAAGAAACT
TCTTTTCACATGGCGCAGTGGCCATGCGGCCCCTTGTGCTGCGTGAAATTGCTGATACACTGGGTCTACACGAGAGCACA
ATCTCTCGCGTGACAACTCAAAAATACATGCTCACGCCGCACGGCATGTTCGAGTTGAAGTACTTCTTCGGTAGCCACGT
CGCGACTGAAACCGGAGGCGAAGCCTCCTCCACCGCGATACGGGCGCTGATCAAACAGTTGATAGGAGCCGAAAACCCGC
AGACCCCATTATCCGATAGCAAGATTGCGGATATGCTGGCAGAACAAGGCATGGTGGTCGCGCGACGCACAGTCGCCAAA
TACCGCGAAGTGTTGAAGATTCCGCCAGTCAATCTCCGCAAGTCCCTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(135-326)

Sigma-54, DNA binding domain (Sigma54_DBD)

(339-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

59.449

100

0.609

Multiple sequence alignment