Detailed information NTG1044533

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACEOAC_RS03770
• Genome accession: NZ_CP168558
• Coordinates: 812520..813713 (-)
• Length: 397 a.a.
• NCBI ID: WP_413444191.1
• Uniprot ID: -
• Organism: Herbaspirillum frisingense strain CT11-119
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 807520..818713

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEOAC_RS03745 (ACEOAC_03745)	cyoE	807900..808793 (+)	894	WP_006461523.1	heme o synthase	-
ACEOAC_RS03750 (ACEOAC_03750)	-	808798..809388 (+)	591	WP_077236082.1	SCO family protein	-
ACEOAC_RS03755 (ACEOAC_03755)	rpoH	809470..810369 (-)	900	WP_077236081.1	RNA polymerase sigma factor RpoH	-
ACEOAC_RS03760 (ACEOAC_03760)	ftsX	810903..811826 (-)	924	WP_413444189.1	permease-like cell division protein FtsX	-
ACEOAC_RS03765 (ACEOAC_03765)	-	811823..812515 (-)	693	WP_413444190.1	cell division ATP-binding protein FtsE	-
ACEOAC_RS03770 (ACEOAC_03770)	pilA	812520..813713 (-)	1194	WP_413444191.1	signal recognition particle-docking protein FtsY	Machinery gene
ACEOAC_RS03775 (ACEOAC_03775)	-	813882..815261 (+)	1380	WP_413444192.1	M16 family metallopeptidase	-
ACEOAC_RS03780 (ACEOAC_03780)	-	815317..815973 (+)	657	WP_413444193.1	AAA family ATPase	-
ACEOAC_RS03785 (ACEOAC_03785)	-	816000..817334 (+)	1335	WP_413628697.1	M16 family metallopeptidase	-
ACEOAC_RS03790 (ACEOAC_03790)	rsmD	817365..818027 (+)	663	WP_413628698.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ACEOAC_RS03795 (ACEOAC_03795)	coaD	818064..818546 (+)	483	WP_006461533.1	pantetheine-phosphate adenylyltransferase	-

Sequence

Protein

• Length: 397 a.a.
• Molecular weight: 41812.27 Da
• Isoelectric Point: 5.3013

>NTDB_id=1044533 ACEOAC_RS03770 WP_413444191.1 812520..813713(-) (pilA) [Herbaspirillum frisingense strain CT11-119]
MFSFFKRKPKPEAQPALPPQPEAAPQPAPTPVEPVPAAPVSPAAPVATAPMVSAPAVAPVAASTAAPAPPVLPEAVAPVE
DTAEEEAEIVAAPEPEPEVKRSWLSRLKAGLSKTSSNLTTLFVGARIDDDLYEELESALLVSDAGVEATQWLLDELKKKV
KAERLTEAAQVRTALRTLLIDLLQPLQRPLVLGREKPLVMMIAGVNGAGKTTTIGKLALHLQAHGQSVLLAAGDTFRAAA
REQLAVWGERNNVQVIAQESGDPAAVAYDSVHSAQARGTHVVMVDTAGRLPTQLHLMDELKKIKRVIAKAMSSAPHEVLL
VIDGNTGQNALAQVKAFDDALGLTGLVVTKLDGTAKGGILAAIAKTRPVPLYFIGVGEKIEDLQPFNATEFVDALLS

Nucleotide

• Length: 1194 bp

>NTDB_id=1044533 ACEOAC_RS03770 WP_413444191.1 812520..813713(-) (pilA) [Herbaspirillum frisingense strain CT11-119]
ATGTTCAGTTTCTTCAAGAGAAAACCCAAACCGGAAGCGCAGCCCGCGCTGCCGCCCCAGCCCGAAGCGGCGCCGCAGCC
GGCCCCCACTCCGGTAGAGCCCGTACCGGCAGCCCCCGTCTCACCTGCTGCTCCCGTTGCAACCGCGCCGATGGTGTCTG
CACCCGCAGTCGCGCCCGTAGCGGCTTCTACCGCGGCCCCTGCGCCGCCAGTGCTGCCCGAGGCAGTTGCCCCCGTCGAG
GATACGGCCGAGGAAGAAGCCGAGATCGTCGCCGCACCCGAGCCGGAACCGGAGGTCAAGCGTTCCTGGCTGTCGCGCCT
GAAGGCGGGGCTGTCCAAGACGTCCAGCAATCTCACCACCCTGTTCGTGGGAGCGCGCATCGATGACGATCTCTACGAAG
AACTGGAATCGGCACTGCTGGTGTCGGACGCTGGTGTCGAGGCCACCCAGTGGCTGCTGGACGAACTGAAGAAGAAGGTC
AAGGCCGAGCGCCTGACCGAAGCCGCCCAGGTGCGTACTGCCTTGCGCACGCTGCTGATCGACCTGCTGCAACCGCTGCA
GCGTCCACTGGTGCTGGGCCGCGAGAAGCCGCTGGTGATGATGATCGCCGGCGTCAACGGTGCCGGCAAGACTACCACCA
TCGGCAAGCTGGCCTTGCACCTGCAGGCCCATGGGCAGTCGGTACTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCC
CGCGAGCAGCTGGCTGTCTGGGGCGAGCGCAACAATGTGCAGGTGATCGCGCAGGAATCCGGTGATCCGGCTGCGGTGGC
CTATGACTCGGTGCATTCGGCGCAGGCGCGCGGCACGCATGTGGTGATGGTCGATACCGCCGGCCGCCTGCCCACGCAAT
TGCACCTGATGGATGAACTCAAGAAGATCAAGCGGGTCATTGCCAAGGCGATGAGTTCGGCCCCCCATGAAGTGCTGCTG
GTCATCGACGGCAACACCGGCCAGAATGCGCTGGCCCAGGTCAAGGCCTTCGATGATGCGCTGGGGCTGACCGGCCTGGT
GGTGACCAAGCTGGACGGCACCGCCAAGGGCGGTATCCTGGCCGCCATCGCCAAGACCCGCCCGGTGCCGCTGTATTTCA
TCGGTGTGGGCGAAAAGATCGAAGACCTGCAACCATTCAACGCCACCGAATTCGTCGATGCCCTCCTGAGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (198-396)

• SRP54-type protein, helical bundle domain (SRP54_N) (117-176)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	51.429	100	0.544