Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   ACEPOS_RS12575 Genome accession   NZ_CP168497
Coordinates   2517675..2518121 (+) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J23     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2512675..2523121
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOS_RS12540 (ACEPOS_12540) - 2513169..2513372 (+) 204 WP_000087561.1 YqgQ family protein -
  ACEPOS_RS12545 (ACEPOS_12545) - 2513369..2514355 (+) 987 WP_000161315.1 ROK family glucokinase -
  ACEPOS_RS12550 (ACEPOS_12550) - 2514355..2514684 (+) 330 WP_020977297.1 MTH1187 family thiamine-binding protein -
  ACEPOS_RS12555 (ACEPOS_12555) - 2514681..2515304 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  ACEPOS_RS12560 (ACEPOS_12560) comGA 2515356..2516330 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  ACEPOS_RS12565 (ACEPOS_12565) comGB 2516302..2517372 (+) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  ACEPOS_RS12570 (ACEPOS_12570) comGC 2517386..2517697 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  ACEPOS_RS12575 (ACEPOS_12575) comGD 2517675..2518121 (+) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  ACEPOS_RS12580 (ACEPOS_12580) comGE 2518108..2518407 (+) 300 WP_000844413.1 hypothetical protein Machinery gene
  ACEPOS_RS12585 (ACEPOS_12585) comGF 2518325..2518822 (+) 498 WP_020977296.1 competence type IV pilus minor pilin ComGF Machinery gene
  ACEPOS_RS12590 (ACEPOS_12590) - 2518919..2519065 (+) 147 WP_001789879.1 hypothetical protein -
  ACEPOS_RS12595 (ACEPOS_12595) - 2519055..2519579 (+) 525 WP_020977295.1 shikimate kinase -
  ACEPOS_RS12600 (ACEPOS_12600) gcvT 2519738..2520829 (+) 1092 WP_020977294.1 glycine cleavage system aminomethyltransferase GcvT -
  ACEPOS_RS12605 (ACEPOS_12605) gcvPA 2520849..2522195 (+) 1347 WP_020977293.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=1044319 ACEPOS_RS12575 WP_001796473.1 2517675..2518121(+) (comGD) [Staphylococcus aureus strain J23]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=1044319 ACEPOS_RS12575 WP_001796473.1 2517675..2518121(+) (comGD) [Staphylococcus aureus strain J23]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment