Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACEPOS_RS03720 Genome accession   NZ_CP168497
Coordinates   762192..762761 (-) Length   189 a.a.
NCBI ID   WP_000872876.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J23     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 757192..767761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOS_RS03680 (ACEPOS_03680) - 757666..758274 (-) 609 WP_000020299.1 class I SAM-dependent methyltransferase -
  ACEPOS_RS03685 (ACEPOS_03685) rplL 758449..758817 (-) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACEPOS_RS03690 (ACEPOS_03690) rplJ 758860..759360 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACEPOS_RS03695 (ACEPOS_03695) rplA 759632..760324 (-) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACEPOS_RS03700 (ACEPOS_03700) rplK 760532..760954 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACEPOS_RS03705 (ACEPOS_03705) nusG 761135..761683 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACEPOS_RS03710 (ACEPOS_03710) secE 761696..761878 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACEPOS_RS03715 (ACEPOS_03715) rpmG 761934..762077 (-) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACEPOS_RS03720 (ACEPOS_03720) sigH 762192..762761 (-) 570 WP_000872876.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACEPOS_RS03725 (ACEPOS_03725) - 762842..763366 (-) 525 WP_000664738.1 NYN domain-containing protein -
  ACEPOS_RS03730 (ACEPOS_03730) rlmB 763366..764112 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACEPOS_RS03735 (ACEPOS_03735) - 764120..764524 (-) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACEPOS_RS03740 (ACEPOS_03740) cysS 764517..765917 (-) 1401 WP_000631977.1 cysteine--tRNA ligase -
  ACEPOS_RS03745 (ACEPOS_03745) cysE 765901..766548 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23097.96 Da        Isoelectric Point: 9.6015

>NTDB_id=1044291 ACEPOS_RS03720 WP_000872876.1 762192..762761(-) (sigH) [Staphylococcus aureus strain J23]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1044291 ACEPOS_RS03720 WP_000872876.1 762192..762761(-) (sigH) [Staphylococcus aureus strain J23]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAACAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAGCGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

99.471

100

0.995
  sigH Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment