Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACEPXD_RS11085 Genome accession   NZ_CP168493
Coordinates   2247273..2248976 (-) Length   567 a.a.
NCBI ID   WP_391116024.1    Uniprot ID   -
Organism   Psychrobacillus sp. L3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2242273..2253976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXD_RS11055 (ACEPXD_11055) - 2242333..2242620 (-) 288 WP_391116017.1 hypothetical protein -
  ACEPXD_RS11060 (ACEPXD_11060) - 2242788..2242997 (+) 210 WP_391116018.1 helix-turn-helix domain-containing protein -
  ACEPXD_RS11065 (ACEPXD_11065) - 2243098..2243874 (-) 777 WP_391116019.1 helix-turn-helix domain-containing protein -
  ACEPXD_RS11070 (ACEPXD_11070) - 2244057..2245022 (-) 966 WP_391116021.1 tyrosine-type recombinase/integrase -
  ACEPXD_RS11075 (ACEPXD_11075) spo0A 2245185..2245976 (-) 792 WP_391116022.1 sporulation transcription factor Spo0A -
  ACEPXD_RS11080 (ACEPXD_11080) - 2246218..2247177 (-) 960 WP_391116023.1 SpoIVB peptidase S55 domain-containing protein -
  ACEPXD_RS11085 (ACEPXD_11085) recN 2247273..2248976 (-) 1704 WP_391116024.1 DNA repair protein RecN Machinery gene
  ACEPXD_RS11090 (ACEPXD_11090) ahrC 2249053..2249502 (-) 450 WP_391116025.1 transcriptional regulator AhrC/ArgR -
  ACEPXD_RS11095 (ACEPXD_11095) - 2249600..2250418 (-) 819 WP_391116026.1 TlyA family RNA methyltransferase -
  ACEPXD_RS11100 (ACEPXD_11100) dxs 2250415..2252310 (-) 1896 WP_391123182.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACEPXD_RS11105 (ACEPXD_11105) - 2252400..2253284 (-) 885 WP_391116027.1 polyprenyl synthetase family protein -
  ACEPXD_RS11110 (ACEPXD_11110) xseB 2253277..2253498 (-) 222 WP_391116028.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64230.39 Da        Isoelectric Point: 5.1502

>NTDB_id=1044229 ACEPXD_RS11085 WP_391116024.1 2247273..2248976(-) (recN) [Psychrobacillus sp. L3]
MLKELSIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGAKKAELEGLFIITNPKHNVFHK
MIDVGVEIDEESIILRRDINDSGKSVCRVNGKLVTLGILREIGSSIIDIHGQHESQELMDEKAHIHLLDQFAGEKIRSVK
ESYKELYSKYKKWKKDLATLTENEQQIAHKIDLYTFQVEEINDSNLVVGEEEQLQEEKKKLQNFHKVFDKMSSAYEAILS
ESKGLDYIGTAMADLQDISDVDKNMLELSESVSSAFYILQDAAYQLKNELDEMEFDSNRLQYVEDRLAFIQTLKRKYGQS
IEAILEYKEQIFKSLEQLVNRDEQIQKTADKIKQIEKDLELVANDLTDKRKNAAKQLSKAIMEQLQELYMEKATFSVMFH
EHSKITYNEYGIDEISFYISTNVGEPPKALTKIASGGELSRMMLALKSIFSMHQGITSIIFDEVDTGVSGRVAQAIAEKI
SGIATNSQVLCISHLPQVAAMADQHLMIKKEVSGNRTYTILEEVMDDRRAEELSRMMSGAEITSTTLQHSKELLKLAVER
KKILRNA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=1044229 ACEPXD_RS11085 WP_391116024.1 2247273..2248976(-) (recN) [Psychrobacillus sp. L3]
TTGTTAAAAGAGTTATCAATTAAAAACTTTGCCATTATTGATGAATTAACAGTAAGTTTTGAGGAAGGACTTACTGTATT
AACTGGAGAGACAGGTGCAGGTAAATCAATAATAATTGATGCTGTTCATTTGTTATGTGGTGGGAGAGGCTCTCAAGAGT
TTATTCGACATGGAGCGAAAAAAGCAGAATTAGAAGGATTATTCATCATCACGAACCCAAAACATAATGTATTTCATAAA
ATGATAGATGTTGGTGTTGAAATAGACGAGGAATCTATTATTTTAAGAAGAGATATTAATGATTCAGGGAAGAGTGTATG
TCGCGTAAACGGAAAACTAGTTACTCTTGGTATATTACGAGAAATTGGATCCTCCATTATTGATATCCATGGGCAGCACG
AGAGCCAAGAACTAATGGATGAAAAGGCACATATTCATTTGCTTGATCAGTTTGCAGGCGAAAAGATAAGAAGCGTAAAA
GAGTCTTATAAAGAGCTCTACTCCAAATATAAAAAGTGGAAAAAAGATTTAGCTACTTTAACGGAAAATGAGCAACAAAT
TGCGCATAAAATAGATTTGTATACTTTTCAAGTGGAAGAAATAAATGATTCAAATTTAGTTGTTGGGGAAGAAGAACAAC
TTCAAGAAGAGAAAAAGAAGCTCCAAAACTTCCATAAGGTCTTTGATAAAATGAGCAGTGCATATGAGGCGATATTATCA
GAATCGAAAGGCTTAGACTACATCGGCACTGCAATGGCAGATTTACAAGATATCTCTGACGTAGATAAGAATATGCTGGA
GCTAAGCGAAAGTGTCTCATCCGCGTTTTATATTTTGCAAGATGCTGCATATCAGTTAAAAAATGAATTAGATGAAATGG
AATTCGATAGTAATCGACTTCAATATGTCGAAGACCGTCTTGCATTCATTCAGACACTAAAGAGAAAATATGGACAGTCT
ATAGAAGCCATTTTAGAATACAAAGAGCAAATTTTCAAAAGTCTCGAGCAATTAGTTAATCGAGATGAACAAATTCAAAA
AACAGCAGATAAGATTAAGCAAATAGAGAAAGATTTAGAACTTGTAGCAAATGATTTAACGGATAAACGAAAAAATGCTG
CCAAACAATTAAGCAAAGCAATTATGGAACAATTACAAGAGCTTTACATGGAAAAAGCAACTTTTTCTGTTATGTTCCAT
GAGCATTCTAAAATAACTTATAACGAGTATGGGATTGACGAAATATCATTTTATATTTCGACGAATGTGGGGGAACCACC
AAAAGCCTTAACGAAAATTGCATCAGGTGGTGAGTTATCACGCATGATGCTTGCTCTAAAAAGTATTTTCTCCATGCATC
AAGGGATAACATCGATCATATTTGATGAAGTTGATACTGGTGTTAGTGGACGAGTAGCTCAAGCGATAGCCGAAAAAATT
TCCGGAATTGCAACTAATTCACAAGTTTTATGTATATCACATCTTCCGCAGGTAGCTGCAATGGCAGACCAACATTTAAT
GATTAAAAAAGAAGTATCGGGAAATAGAACATACACCATCTTAGAAGAAGTGATGGATGATCGACGAGCCGAAGAGTTAA
GCCGTATGATGTCAGGTGCTGAAATTACGAGTACTACATTACAACATTCAAAAGAACTGCTAAAATTAGCTGTAGAACGA
AAAAAAATATTGCGAAATGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.982

100

0.533

Multiple sequence alignment