Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8965_RS06065 | Genome accession | NZ_AP028338 |
| Coordinates | 1117730..1118035 (+) | Length | 101 a.a. |
| NCBI ID | WP_002834517.1 | Uniprot ID | A0A5T0ZVB2 |
| Organism | Campylobacter coli strain BCH-10307 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1112730..1123035
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8965_RS06040 (B10307_11870) | rpsR | 1113089..1113349 (+) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
| R8965_RS06045 (B10307_11880) | lon | 1113405..1115780 (-) | 2376 | WP_317727853.1 | endopeptidase La | - |
| R8965_RS06050 (B10307_11890) | - | 1115796..1116443 (-) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| R8965_RS06055 (B10307_11900) | fliW | 1116607..1116996 (+) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8965_RS06060 (B10307_11910) | proC | 1116996..1117733 (+) | 738 | WP_002834520.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8965_RS06065 (B10307_11920) | ctsT | 1117730..1118035 (+) | 306 | WP_002834517.1 | hypothetical protein | Machinery gene |
| R8965_RS06070 (B10307_11930) | - | 1118028..1118696 (+) | 669 | WP_002797569.1 | hypothetical protein | - |
| R8965_RS06075 (B10307_11940) | - | 1118693..1119145 (+) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8965_RS06080 (B10307_11950) | - | 1119138..1119767 (-) | 630 | WP_002777119.1 | uroporphyrinogen-III synthase | - |
| R8965_RS06085 (B10307_11960) | thiE | 1119745..1120377 (-) | 633 | WP_002834515.1 | thiamine phosphate synthase | - |
| R8965_RS06090 (B10307_11970) | thiD | 1120367..1121179 (-) | 813 | WP_002797568.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8965_RS06095 (B10307_11980) | - | 1121179..1121862 (-) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| R8965_RS06100 (B10307_11990) | - | 1121859..1122620 (-) | 762 | WP_025431509.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12456.28 Da Isoelectric Point: 6.0633
>NTDB_id=104409 R8965_RS06065 WP_002834517.1 1117730..1118035(+) (ctsT) [Campylobacter coli strain BCH-10307]
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILYIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFVNDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=104409 R8965_RS06065 WP_002834517.1 1117730..1118035(+) (ctsT) [Campylobacter coli strain BCH-10307]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTATATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTGTAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
50 |
97.03 |
0.485 |