Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8575_RS07925 Genome accession   NZ_AP028336
Coordinates   1534213..1535391 (-) Length   392 a.a.
NCBI ID   WP_100647898.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10190     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529213..1540391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8575_RS07895 (B10190_15610) - 1529755..1530096 (+) 342 WP_002784057.1 hypothetical protein -
  R8575_RS07900 (B10190_15620) flgM 1530159..1530356 (+) 198 WP_002779262.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8575_RS07905 (B10190_15630) - 1530399..1530833 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8575_RS07910 (B10190_15640) flgK 1530843..1532669 (+) 1827 WP_002867248.1 flagellar hook-associated protein FlgK -
  R8575_RS07915 (B10190_15650) - 1532686..1533448 (+) 763 Protein_1547 TIGR02757 family protein -
  R8575_RS07920 (B10190_15660) - 1533452..1534216 (+) 765 WP_002855301.1 TSUP family transporter -
  R8575_RS07925 (B10190_15670) ctsF 1534213..1535391 (-) 1179 WP_100647898.1 type II secretion system F family protein Machinery gene
  R8575_RS07930 (B10190_15680) ctsE 1535388..1536947 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8575_RS07935 (B10190_15690) ctsX 1536937..1537524 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8575_RS07940 (B10190_15700) ctsP 1537528..1538136 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8575_RS07945 (B10190_15710) ctsD 1538129..1539541 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8575_RS07950 (B10190_15720) ctsR 1539519..1539830 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 392 a.a.        Molecular weight: 45664.28 Da        Isoelectric Point: 9.0938

>NTDB_id=104397 R8575_RS07925 WP_100647898.1 1534213..1535391(-) (ctsF) [Campylobacter jejuni strain BCH-10190]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF

Nucleotide


Download         Length: 1179 bp        

>NTDB_id=104397 R8575_RS07925 WP_100647898.1 1534213..1535391(-) (ctsF) [Campylobacter jejuni strain BCH-10190]
ATGAAATTTTATGAAGTGGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTAGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCACTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGAATTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGTGATTTT
TTATTTTTAAAAGTACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTCAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGGTTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGTTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGTTCGGGGGTCAATTTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

99.745

100

0.997

Multiple sequence alignment