Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsR   Type   Machinery gene
Locus tag   R8575_RS07950 Genome accession   NZ_AP028336
Coordinates   1539519..1539830 (-) Length   103 a.a.
NCBI ID   WP_002855438.1    Uniprot ID   A0AA44HLF8
Organism   Campylobacter jejuni strain BCH-10190     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1534519..1544830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8575_RS07930 (B10190_15680) ctsE 1535388..1536947 (-) 1560 WP_032597243.1 GspE/PulE family protein Machinery gene
  R8575_RS07935 (B10190_15690) ctsX 1536937..1537524 (-) 588 WP_002851370.1 membrane protein Machinery gene
  R8575_RS07940 (B10190_15700) ctsP 1537528..1538136 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8575_RS07945 (B10190_15710) ctsD 1538129..1539541 (-) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8575_RS07950 (B10190_15720) ctsR 1539519..1539830 (-) 312 WP_002855438.1 hypothetical protein Machinery gene
  R8575_RS07955 (B10190_15730) nifJ 1539854..1543414 (-) 3561 WP_002851382.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  R8575_RS07960 - 1543507..1544149 (-) 643 Protein_1556 HAD family hydrolase -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 12475.38 Da        Isoelectric Point: 5.8722

>NTDB_id=104402 R8575_RS07950 WP_002855438.1 1539519..1539830(-) (ctsR) [Campylobacter jejuni strain BCH-10190]
MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRHIKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKE
IKFQYDNLEIAIQINKNDKININ

Nucleotide


Download         Length: 312 bp        

>NTDB_id=104402 R8575_RS07950 WP_002855438.1 1539519..1539830(-) (ctsR) [Campylobacter jejuni strain BCH-10190]
TTGTGTTTTAGCACTTTGTTTGCACAAGATAATTTTGAAGAGTATTTTAAACTTATAGATAAAGAAAATCGTATAAATTT
TAATACTCTTCAAAACCCATTTGTGAATCCTACTTTTGAAAAATTAAGACATATTAAAATTACTGCAATTATGCTTGATA
AAGTAAAAATTTATGATCGATGGTATAAAAAAGGTGATATGATTGATGATGCTATAATATATGAAATAAATACTAAAGAG
ATTAAATTCCAATATGATAATTTAGAAATTGCAATCCAAATAAATAAAAATGATAAGATTAATATTAATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsR Campylobacter jejuni subsp. jejuni 81-176

100

100

1

Multiple sequence alignment