Detailed information NTG1043966

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEPWJ_RS21305
• Genome accession: NZ_CP168405
• Coordinates: 4399311..4400111 (+)
• Length: 266 a.a.
• NCBI ID: WP_002888947.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain K22877
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4394311..4405111

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPWJ_RS21270 (ACEPWJ_21270)	gspH	4394467..4394982 (+)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-
ACEPWJ_RS21275 (ACEPWJ_21275)	gspI	4394979..4395344 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
ACEPWJ_RS21280 (ACEPWJ_21280)	gspJ	4395341..4395937 (+)	597	WP_004222700.1	type II secretion system minor pseudopilin GspJ	-
ACEPWJ_RS21285 (ACEPWJ_21285)	gspK	4395934..4396920 (+)	987	WP_004222697.1	type II secretion system minor pseudopilin GspK	-
ACEPWJ_RS21290 (ACEPWJ_21290)	gspL	4396907..4398100 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
ACEPWJ_RS21295 (ACEPWJ_21295)	-	4398093..4398578 (+)	486	WP_004151943.1	type II secretion system protein M	-
ACEPWJ_RS21300 (ACEPWJ_21300)	-	4398568..4399314 (+)	747	WP_004145897.1	type II secretion system protein N	-
ACEPWJ_RS21305 (ACEPWJ_21305)	pilD	4399311..4400111 (+)	801	WP_002888947.1	A24 family peptidase	Machinery gene
ACEPWJ_RS21310 (ACEPWJ_21310)	hrpB	4400159..4402588 (-)	2430	WP_029884482.1	ATP-dependent helicase HrpB	-
ACEPWJ_RS21315 (ACEPWJ_21315)	thpR	4402661..4403197 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
ACEPWJ_RS21320 (ACEPWJ_21320)	sfsA	4403197..4403913 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
ACEPWJ_RS21325 (ACEPWJ_21325)	dksA	4404076..4404531 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29419.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=1043966 ACEPWJ_RS21305 WP_002888947.1 4399311..4400111(+) (pilD) [Klebsiella pneumoniae strain K22877]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=1043966 ACEPWJ_RS21305 WP_002888947.1 4399311..4400111(+) (pilD) [Klebsiella pneumoniae strain K22877]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425