Detailed information NTG1043806

Bioinformatically predicted

Overview

• Name: dprA
• Type: Machinery gene
• Locus tag: PG338_RS04170
• Genome accession: NZ_CP168321
• Coordinates: 894711..895814 (-)
• Length: 367 a.a.
• NCBI ID: WP_004918085.1
• Uniprot ID: -
• Organism: Riemerella anatipestifer strain RCAD1242
• Function: ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 889711..900814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG338_RS04145 (PG338_004145)	comF	890906..891559 (-)	654	WP_004918078.1	ComF family protein	Machinery gene
PG338_RS04155 (PG338_004155)	-	891781..892332 (-)	552	WP_004918080.1	hypothetical protein	-
PG338_RS04160 (PG338_004160)	-	892387..893037 (-)	651	WP_004918082.1	HD domain-containing protein	-
PG338_RS04165 (PG338_004165)	gdhA	893169..894527 (-)	1359	WP_014938006.1	NADP-specific glutamate dehydrogenase	-
PG338_RS04170 (PG338_004170)	dprA	894711..895814 (-)	1104	WP_004918085.1	DNA-processing protein DprA	Machinery gene
PG338_RS04175 (PG338_004175)	-	895817..896194 (-)	378	WP_004918086.1	group III truncated hemoglobin	-
PG338_RS04180 (PG338_004180)	ruvC	896205..896759 (-)	555	WP_262997456.1	crossover junction endodeoxyribonuclease RuvC	-
PG338_RS04185 (PG338_004185)	-	896783..897973 (-)	1191	WP_065189192.1	carboxypeptidase-like regulatory domain-containing protein	-
PG338_RS04190 (PG338_004190)	-	898003..898476 (-)	474	WP_004918092.1	Lrp/AsnC family transcriptional regulator	-

Sequence

Protein

• Length: 367 a.a.
• Molecular weight: 40491.51 Da
• Isoelectric Point: 6.6968

>NTDB_id=1043806 PG338_RS04170 WP_004918085.1 894711..895814(-) (dprA) [Riemerella anatipestifer strain RCAD1242]
MVNAEEILYSIALRRSPLVGDVIFASLVSEVGSAKEAWGLSKLELRKISGVGKQIASNIGDKNLLKFAEKEIEFCIKNEI
KIHLRHLNQLPRLLGECYDAPAILFQKGDYEDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIIYPSKHKILAEEILNNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPVQEPVYDI
IKEVNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRRYSII

Nucleotide

• Length: 1104 bp

>NTDB_id=1043806 PG338_RS04170 WP_004918085.1 894711..895814(-) (dprA) [Riemerella anatipestifer strain RCAD1242]
ATGGTAAATGCGGAAGAAATTTTATATTCTATTGCTCTTCGGCGAAGCCCATTGGTGGGAGATGTTATATTTGCAAGTTT
GGTTAGCGAGGTAGGCTCTGCTAAGGAAGCGTGGGGTCTGTCTAAGTTGGAATTACGGAAAATATCAGGCGTAGGTAAGC
AAATTGCCTCAAACATCGGAGATAAAAATCTTTTAAAATTTGCTGAAAAGGAAATAGAGTTCTGCATTAAAAACGAAATA
AAAATCCACTTACGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCTGCTATTCTTTTTCAAAA
AGGAGATTATGAGGATACCGCTAATAATATTAGTATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGAATAGCTCAT
CAAGAGGCTTTAAAAAACAATATAAAAACTTCAGCGGTTTTAGCACACGGTTTACATATCATTTATCCGTCCAAACATAA
AATTCTCGCTGAAGAAATATTAAATAATGGTGGAGCTTTGTTTTCTGAATTCTGCTCTGATGAAAAGCCAGATAGAGAAC
ATTTTTTGCAAAGAAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCAGGAGGCTCT
ATTAGCACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTTTGGCAGGGCGTCTTACAGATAAATATAGCCA
AGGTTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCAGTTGAAGTTTCTTTAACTCCTGTTCAGGAGCCTGTTTATGATATT
ATTAAGGAGGTTAATGATATTTCATTAGATGACTTGTCAGAAAAATTAAATCAACCCATATCTAAAGTGTTTCCTGTTTT
ATTGGAATTAGAATTATTGGGGTTGATAAGGGCAAATTCTGGGAGGAGATATTCTATCATTTAG

Domains

Predicted by InterproScan.

• DNA recombination-mediator protein A (DNA_processg_A) (77-281)

• DprA winged helix domain (DprA_WH) (309-361)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
dprA	Riemerella anatipestifer ATCC 11845 = DSM 15868	100	100	1