Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PG338_RS04145 Genome accession   NZ_CP168321
Coordinates   890906..891559 (-) Length   217 a.a.
NCBI ID   WP_004918078.1    Uniprot ID   A0AAP6LJM8
Organism   Riemerella anatipestifer strain RCAD1242     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 885906..896559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG338_RS04130 (PG338_004130) - 886726..887808 (-) 1083 WP_004918073.1 serine hydrolase -
  PG338_RS04135 (PG338_004135) - 887919..889574 (-) 1656 WP_004918074.1 ribonucleoside-diphosphate reductase subunit alpha -
  PG338_RS04140 (PG338_004140) - 889622..890596 (-) 975 WP_004918076.1 ribonucleotide-diphosphate reductase subunit beta -
  PG338_RS04145 (PG338_004145) comF 890906..891559 (-) 654 WP_004918078.1 ComF family protein Machinery gene
  PG338_RS04155 (PG338_004155) - 891781..892332 (-) 552 WP_004918080.1 hypothetical protein -
  PG338_RS04160 (PG338_004160) - 892387..893037 (-) 651 WP_004918082.1 HD domain-containing protein -
  PG338_RS04165 (PG338_004165) gdhA 893169..894527 (-) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  PG338_RS04170 (PG338_004170) dprA 894711..895814 (-) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  PG338_RS04175 (PG338_004175) - 895817..896194 (-) 378 WP_004918086.1 group III truncated hemoglobin -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25339.46 Da        Isoelectric Point: 9.4150

>NTDB_id=1043805 PG338_RS04145 WP_004918078.1 890906..891559(-) (comF) [Riemerella anatipestifer strain RCAD1242]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=1043805 PG338_RS04145 WP_004918078.1 890906..891559(-) (comF) [Riemerella anatipestifer strain RCAD1242]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(163-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment