Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACD268_RS08420 Genome accession   NZ_CP168299
Coordinates   1644629..1645360 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1639629..1650360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS08390 (ACD268_08390) blpC 1640177..1640332 (+) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -
  ACD268_RS08395 (ACD268_08395) - 1640377..1641717 (-) 1341 WP_050110752.1 sensor histidine kinase -
  ACD268_RS08400 (ACD268_08400) comE/blpR 1641731..1642468 (-) 738 WP_050110750.1 LytTR family DNA-binding domain-containing protein Regulator
  ACD268_RS08405 (ACD268_08405) - 1642473..1642811 (-) 339 WP_050110747.1 LytTR family DNA-binding domain-containing protein -
  ACD268_RS08410 (ACD268_08410) - 1643086..1643415 (+) 330 WP_000132575.1 hypothetical protein -
  ACD268_RS08415 (ACD268_08415) - 1643583..1644632 (-) 1050 WP_373381814.1 ABC transporter permease -
  ACD268_RS08420 (ACD268_08420) pptA 1644629..1645360 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ACD268_RS08425 (ACD268_08425) - 1645428..1645838 (+) 411 WP_044814957.1 HIT family protein -
  ACD268_RS08430 (ACD268_08430) - 1645848..1646135 (+) 288 WP_000777753.1 hypothetical protein -
  ACD268_RS08435 (ACD268_08435) - 1646297..1646671 (+) 375 WP_373381815.1 hypothetical protein -
  ACD268_RS08440 (ACD268_08440) dnaJ 1646983..1648119 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ACD268_RS08445 (ACD268_08445) - 1648521..1648877 (-) 357 WP_000114429.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1043728 ACD268_RS08420 WP_000889923.1 1644629..1645360(-) (pptA) [Streptococcus pneumoniae strain FC1]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1043728 ACD268_RS08420 WP_000889923.1 1644629..1645360(-) (pptA) [Streptococcus pneumoniae strain FC1]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGCGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACAAAAGAG
GAGGACCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment