Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   QOR58_RS10190 Genome accession   NZ_OX460941
Coordinates   1991687..1992955 (+) Length   422 a.a.
NCBI ID   WP_000774763.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986687..1997955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR58_RS10155 prmA 1986725..1987678 (-) 954 WP_001099290.1 50S ribosomal protein L11 methyltransferase -
  QOR58_RS10160 - 1987694..1988776 (-) 1083 WP_000203895.1 hypothetical protein -
  QOR58_RS10165 - 1988769..1989203 (-) 435 WP_000350745.1 NUDIX hydrolase -
  QOR58_RS10170 - 1989339..1989809 (-) 471 WP_001051337.1 DUF3013 family protein -
  QOR58_RS10175 - 1989883..1990410 (-) 528 WP_001031087.1 DUF3278 domain-containing protein -
  QOR58_RS10180 - 1990413..1990601 (-) 189 WP_001082463.1 helix-turn-helix domain-containing protein -
  QOR58_RS10185 - 1991203..1991694 (+) 492 WP_025194498.1 GNAT family N-acetyltransferase -
  QOR58_RS10190 rarA 1991687..1992955 (+) 1269 WP_000774763.1 replication-associated recombination protein A Machinery gene
  QOR58_RS11200 - 1993357..1993553 (-) 197 Protein_1936 tyrosine-type recombinase/integrase -
  QOR58_RS11205 - 1993593..1993736 (-) 144 Protein_1937 hypothetical protein -
  QOR58_RS10200 - 1993751..1994029 (-) 279 WP_001870649.1 hypothetical protein -
  QOR58_RS10205 - 1994026..1994412 (-) 387 WP_000731526.1 DUF1310 family protein -
  QOR58_RS10210 - 1994519..1995091 (-) 573 WP_000622523.1 hypothetical protein -
  QOR58_RS10215 - 1995093..1995425 (-) 333 WP_000792760.1 hypothetical protein -
  QOR58_RS10220 - 1996484..1996810 (+) 327 WP_000134166.1 hypothetical protein -
  QOR58_RS10225 - 1996859..1996987 (+) 129 WP_001870638.1 hypothetical protein -
  QOR58_RS11210 - 1996948..1997106 (+) 159 Protein_1944 site-specific integrase -
  QOR58_RS10230 - 1997428..1997718 (+) 291 WP_000078286.1 WXG100 family type VII secretion target -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46584.00 Da        Isoelectric Point: 6.5117

>NTDB_id=1043705 QOR58_RS10190 WP_000774763.1 1991687..1992955(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-304]
MADNLALRMRPRNINEVIGQQHLVGNGKIIDRMVAANMLSSMILYGPPGIGKTSIASAIAGTTKYAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKKAIQ
LAISDKERGFPFLVTIDDEALDFIVTATNGDLRSAYNSLDLAVMSTSPNEDGSRHISLETMENSLQRSYITMDKNGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTIIAYEDIGLANPEAQIHTVTALEAAQRIGFPEARILIANIV
VDLALSPKSNSAYLAMDAALADLRRSGNLPIPRHLRDGHYSGSKTLGNAKDYKYPHAYPEKWVKQQYLPDKLVGHNYFEA
NETGKYERALGSNKERIDKLSD

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=1043705 QOR58_RS10190 WP_000774763.1 1991687..1992955(+) (rarA) [Streptococcus agalactiae isolate MRI Z2-304]
ATGGCTGACAATCTTGCTCTACGTATGCGTCCTCGCAATATTAATGAAGTTATCGGACAACAACATCTCGTTGGTAATGG
CAAAATTATTGATCGAATGGTTGCAGCTAATATGTTATCTTCCATGATCCTATATGGACCACCTGGTATCGGGAAGACTT
CTATTGCTTCTGCTATTGCTGGTACTACTAAATATGCCTTTCGTACTTTTAATGCCACTGTTGATAGTAAAAAACGTCTT
CAAGAAATTGCAGAAGAAGCTAAATTTTCTGGTGGCTTAGTTTTATTACTTGACGAGATCCATAGACTTGACAAGACAAA
ACAAGATTTTCTTTTACCTTTACTTGAGAATGGCAATATTATTATGATTGGAGCAACAACTGAAAATCCTTTCTTTTCAG
TAACTCCTGCCATTAGAAGTAGGGTACAAATTTTTGAGTTAGAACCTCTTTCTAACGAGGATATTAAAAAAGCCATTCAA
CTAGCAATTTCCGATAAAGAACGGGGATTTCCTTTTTTAGTGACAATTGATGATGAGGCGCTAGATTTCATTGTTACCGC
CACAAATGGAGACCTACGATCTGCTTATAATTCCTTGGATCTAGCAGTCATGTCTACTTCTCCTAATGAAGATGGTAGCC
GTCATATTAGTCTAGAGACAATGGAAAATAGTCTGCAGCGTAGTTATATTACAATGGATAAAAACGGAGATGGGCATTAT
GATGTCCTATCAGCCTTACAAAAATCAATTAGAGGTTCTGATGTCAATGCCAGCCTGCACTATGCCGCTCGTTTAGTAGA
AGCTGGAGATTTACCCAGTTTAGCAAGACGTTTGACCATTATTGCTTATGAAGATATCGGCTTAGCTAACCCCGAAGCAC
AAATACATACTGTGACTGCATTGGAAGCTGCTCAACGCATTGGTTTTCCAGAAGCTCGTATTCTTATTGCTAACATTGTT
GTGGATTTAGCTCTATCACCTAAATCAAATTCAGCCTATTTGGCTATGGATGCAGCCTTAGCTGATTTACGTCGTTCAGG
AAATTTACCTATTCCACGTCACCTAAGAGATGGACATTACAGCGGTAGTAAAACCTTGGGCAATGCAAAGGATTACAAGT
ACCCTCACGCCTATCCTGAAAAATGGGTTAAACAACAATACTTACCAGATAAACTAGTAGGACATAATTATTTTGAAGCC
AATGAAACTGGTAAATACGAACGCGCACTTGGTTCAAATAAAGAGCGCATTGATAAGCTCTCAGACTGA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(174-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.712

98.815

0.59

Multiple sequence alignment