Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACEPRU_RS23705 | Genome accession | NZ_CP168297 |
| Coordinates | 4708379..4709176 (+) | Length | 265 a.a. |
| NCBI ID | WP_088911853.1 | Uniprot ID | - |
| Organism | Raoultella ornithinolytica isolate SECR20-0334 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4703379..4714176
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPRU_RS23670 (ACEPRU_23670) | gspH | 4703532..4704017 (+) | 486 | WP_233471560.1 | type II secretion system minor pseudopilin GspH | - |
| ACEPRU_RS23675 (ACEPRU_23675) | gspI | 4704014..4704379 (+) | 366 | WP_004858044.1 | type II secretion system minor pseudopilin GspI | - |
| ACEPRU_RS23680 (ACEPRU_23680) | gspJ | 4704391..4704975 (+) | 585 | WP_015585121.1 | type II secretion system minor pseudopilin GspJ | - |
| ACEPRU_RS23685 (ACEPRU_23685) | gspK | 4704972..4705958 (+) | 987 | WP_054829280.1 | type II secretion system minor pseudopilin GspK | - |
| ACEPRU_RS23690 (ACEPRU_23690) | gspL | 4705945..4707147 (+) | 1203 | WP_373393140.1 | type II secretion system protein GspL | - |
| ACEPRU_RS23695 (ACEPRU_23695) | gspM | 4707140..4707634 (+) | 495 | WP_064357507.1 | type II secretion system protein GspM | - |
| ACEPRU_RS23700 (ACEPRU_23700) | - | 4707624..4708364 (+) | 741 | WP_032716580.1 | type II secretion system protein N | - |
| ACEPRU_RS23705 (ACEPRU_23705) | pilD | 4708379..4709176 (+) | 798 | WP_088911853.1 | A24 family peptidase | Machinery gene |
| ACEPRU_RS23710 (ACEPRU_23710) | hrpB | 4709197..4711626 (-) | 2430 | WP_064359573.1 | ATP-dependent helicase HrpB | - |
| ACEPRU_RS23715 (ACEPRU_23715) | thpR | 4711699..4712235 (+) | 537 | WP_004858022.1 | RNA 2',3'-cyclic phosphodiesterase | - |
| ACEPRU_RS23720 (ACEPRU_23720) | sfsA | 4712235..4712951 (+) | 717 | WP_071359157.1 | DNA/RNA nuclease SfsA | - |
| ACEPRU_RS23725 (ACEPRU_23725) | dksA | 4713116..4713571 (+) | 456 | WP_004858018.1 | RNA polymerase-binding protein DksA | - |
Sequence
Protein
Download Length: 265 a.a. Molecular weight: 29348.01 Da Isoelectric Point: 8.4762
>NTDB_id=1043680 ACEPRU_RS23705 WP_088911853.1 4708379..4709176(+) (pilD) [Raoultella ornithinolytica isolate SECR20-0334]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFMLAGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSSLFLWTQTL
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFMLAGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSSLFLWTQTL
Nucleotide
Download Length: 798 bp
>NTDB_id=1043680 ACEPRU_RS23705 WP_088911853.1 4708379..4709176(+) (pilD) [Raoultella ornithinolytica isolate SECR20-0334]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCTTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAGCTGGCCAGCGGGCTGCTCTTTATGTT
GGCCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCAGCCTGTTTCTGTGGACTCAGACGCTGTAA
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCTTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTATCCGCTGACGGAGCTGGCCAGCGGGCTGCTCTTTATGTT
GGCCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
CCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCAGCCTGTTTCTGTGGACTCAGACGCTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
48.529 |
100 |
0.498 |
| pilD | Vibrio campbellii strain DS40M4 |
45.221 |
100 |
0.464 |
| pilD | Neisseria gonorrhoeae MS11 |
46.275 |
96.226 |
0.445 |
| pilD | Acinetobacter baumannii D1279779 |
44.574 |
97.358 |
0.434 |
| pilD | Acinetobacter nosocomialis M2 |
44.186 |
97.358 |
0.43 |