Detailed information NTG1043658

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACEPO1_RS21360
• Genome accession: NZ_CP168293
• Coordinates: 4471025..4471822 (+)
• Length: 265 a.a.
• NCBI ID: WP_004858028.1
• Uniprot ID: -
• Organism: Raoultella ornithinolytica isolate SECR20-0777
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4466025..4476822

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEPO1_RS21325 (ACEPO1_21325)	gspH	4466178..4466663 (+)	486	WP_233471560.1	type II secretion system minor pseudopilin GspH	-
ACEPO1_RS21330 (ACEPO1_21330)	gspI	4466660..4467025 (+)	366	WP_004858044.1	type II secretion system minor pseudopilin GspI	-
ACEPO1_RS21335 (ACEPO1_21335)	gspJ	4467037..4467621 (+)	585	WP_004858042.1	type II secretion system minor pseudopilin GspJ	-
ACEPO1_RS21340 (ACEPO1_21340)	gspK	4467618..4468604 (+)	987	WP_048024055.1	type II secretion system minor pseudopilin GspK	-
ACEPO1_RS21345 (ACEPO1_21345)	gspL	4468591..4469793 (+)	1203	WP_373386121.1	type II secretion system protein GspL	-
ACEPO1_RS21350 (ACEPO1_21350)	gspM	4469786..4470280 (+)	495	WP_064357507.1	type II secretion system protein GspM	-
ACEPO1_RS21355 (ACEPO1_21355)	-	4470270..4471010 (+)	741	WP_104896976.1	type II secretion system protein N	-
ACEPO1_RS21360 (ACEPO1_21360)	pilD	4471025..4471822 (+)	798	WP_004858028.1	A24 family peptidase	Machinery gene
ACEPO1_RS21365 (ACEPO1_21365)	hrpB	4471843..4474281 (-)	2439	WP_373386122.1	ATP-dependent helicase HrpB	-
ACEPO1_RS21370 (ACEPO1_21370)	thpR	4474354..4474890 (+)	537	WP_004858022.1	RNA 2',3'-cyclic phosphodiesterase	-
ACEPO1_RS21375 (ACEPO1_21375)	sfsA	4474890..4475606 (+)	717	WP_004858020.1	DNA/RNA nuclease SfsA	-
ACEPO1_RS21380 (ACEPO1_21380)	dksA	4475771..4476226 (+)	456	WP_004858018.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 265 a.a.
• Molecular weight: 29315.95 Da
• Isoelectric Point: 8.4762

>NTDB_id=1043658 ACEPO1_RS21360 WP_004858028.1 4471025..4471822(+) (pilD) [Raoultella ornithinolytica isolate SECR20-0777]
MTLLSAFSLQFPLLWGGLLFIFGLTFGSFFNVVIYRLPLMMQQEESARFNLCVPASFCPQCQRPIIWRDNIPLLSYLSLK
GRARCCQAPISQRYPLTELASGLLFVLTGYLLTPGLPLLGGLILLSTLLVLAIIDGQTQLLPDRLTLPLLWAGLLFNLNG
TFVPLSEAVIGAMTGYLSLWTVYWLFRLLTGKEALGYGDFKLLAALGAWSGWQILPQTLLCASASGLIWTLLQRRITLQS
LDQPLAFGPWLALAGSGLFLWTQTL

Nucleotide

• Length: 798 bp

>NTDB_id=1043658 ACEPO1_RS21360 WP_004858028.1 4471025..4471822(+) (pilD) [Raoultella ornithinolytica isolate SECR20-0777]
ATGACGCTACTGAGCGCATTTTCGTTGCAGTTCCCCCTGTTATGGGGCGGATTGTTGTTTATTTTCGGCCTGACGTTTGG
CAGCTTTTTTAACGTGGTTATCTACCGTTTGCCGCTGATGATGCAGCAGGAAGAGTCCGCACGATTCAACCTGTGCGTTC
CCGCCTCCTTCTGCCCCCAGTGCCAGCGGCCCATCATCTGGCGGGATAATATTCCGCTGCTCAGCTATCTCTCACTCAAA
GGGCGCGCCCGCTGCTGCCAGGCGCCCATTTCTCAGCGCTACCCGCTGACGGAACTGGCCAGCGGACTGCTCTTTGTGTT
GACCGGCTATCTGCTGACGCCGGGATTACCGCTGCTGGGGGGCCTGATCCTGCTCTCCACGCTGCTGGTACTGGCGATCA
TCGACGGCCAGACTCAGCTCCTGCCGGATCGGCTGACTCTGCCGCTGCTGTGGGCCGGTCTGCTGTTTAATCTCAACGGC
ACGTTTGTCCCGCTCAGCGAAGCGGTGATCGGCGCCATGACGGGCTATTTATCACTGTGGACGGTTTACTGGCTGTTTCG
TCTGCTGACCGGCAAAGAGGCGCTAGGATACGGCGATTTTAAGCTGCTGGCGGCACTCGGCGCATGGTCCGGCTGGCAGA
TCCTGCCGCAGACGCTGCTGTGCGCCTCGGCCAGCGGCCTGATCTGGACCTTGCTGCAACGGCGGATCACGCTCCAGTCG
CTGGATCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCGGGCAGCGGCCTGTTTCTGTGGACTCAGACGCTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (122-230)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	48.529	100	0.498
pilD	Vibrio campbellii strain DS40M4	45.221	100	0.464
pilD	Neisseria gonorrhoeae MS11	46.614	94.717	0.442
pilD	Acinetobacter baumannii D1279779	44.574	97.358	0.434
pilD	Acinetobacter nosocomialis M2	44.186	97.358	0.43