Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   QOR58_RS02235 Genome accession   NZ_OX460941
Coordinates   388499..389533 (+) Length   344 a.a.
NCBI ID   WP_283571503.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-304     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 383499..394533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR58_RS02195 tsaE 383576..384019 (+) 444 WP_000500161.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  QOR58_RS02200 - 384012..384533 (+) 522 WP_000043146.1 GNAT family N-acetyltransferase -
  QOR58_RS02205 - 384542..385849 (+) 1308 WP_000708160.1 LCP family protein -
  QOR58_RS02210 - 385913..386209 (-) 297 WP_000690175.1 hypothetical protein -
  QOR58_RS02215 - 386206..386625 (-) 420 WP_000368097.1 HIT family protein -
  QOR58_RS02220 - 386961..387464 (+) 504 WP_000773455.1 hypothetical protein -
  QOR58_RS02225 - 387516..387700 (-) 185 Protein_363 hypothetical protein -
  QOR58_RS02230 pptA 387772..388497 (+) 726 WP_000912310.1 ABC transporter ATP-binding protein Regulator
  QOR58_RS02235 pptB 388499..389533 (+) 1035 WP_283571503.1 ABC transporter permease Regulator
  QOR58_RS02240 - 389591..390391 (+) 801 WP_000155919.1 phosphotransferase family protein -
  QOR58_RS02245 trmB 390381..391016 (+) 636 WP_001266024.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  QOR58_RS02255 rimP 391506..391982 (+) 477 WP_041971671.1 ribosome maturation factor RimP -
  QOR58_RS02260 nusA 392018..393169 (+) 1152 WP_000032295.1 transcription termination factor NusA -
  QOR58_RS02265 - 393191..393487 (+) 297 WP_001140526.1 YlxR family protein -
  QOR58_RS02270 - 393480..393782 (+) 303 WP_001065560.1 YlxQ-related RNA-binding protein -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40338.70 Da        Isoelectric Point: 10.4673

>NTDB_id=1043641 QOR58_RS02235 WP_283571503.1 388499..389533(+) (pptB) [Streptococcus agalactiae isolate MRI Z2-304]
MKKLFNKRRSLFLTQNSKYLRYVFNDHFVLVLMFLSGFLLYQYSRLLKDFPKTHWPIIVIVSIIILMLLAMGEIASYLEP
ADKQFLLIKEEAIKEIINSAKKRTYIFWLVIQTLFLVLISPILIKLGLSVFMITLLIFGLGIIKWLVITYKVKVFYNNQN
LNWDAAINHEQERKQSILKFFSLFTNVKGISTSVKRRSFLDGILKLISKTPSRLWTNLFVRAFLRSSDYLGLTIRLVTLN
ILSVIFVNETYLALALAFVFNYLLLFQLLALGHHYDYQYMNQLYLVRLNAKASQLKGFLRVLSYAVTVIDSILIRELKPV
ILLIVLMLIVTEYYIPYKIKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=1043641 QOR58_RS02235 WP_283571503.1 388499..389533(+) (pptB) [Streptococcus agalactiae isolate MRI Z2-304]
ATGAAAAAGTTATTTAATAAACGTCGAAGTCTCTTTTTAACTCAAAATAGTAAATATTTGAGATACGTCTTTAATGATCA
TTTTGTATTAGTATTAATGTTTTTGTCAGGTTTTTTGTTATATCAGTATAGCCGATTACTAAAAGACTTTCCAAAAACAC
ATTGGCCAATTATCGTGATTGTGTCAATCATTATCTTAATGTTACTAGCGATGGGGGAAATAGCCAGCTATTTAGAACCG
GCTGATAAACAATTTTTACTTATAAAAGAAGAAGCAATAAAGGAAATTATAAATTCTGCTAAAAAACGGACTTATATCTT
TTGGTTGGTTATTCAAACCTTATTTTTAGTATTAATATCACCAATTTTGATAAAGCTAGGCTTGTCAGTTTTTATGATTA
CATTGTTAATTTTTGGTCTAGGAATAATCAAATGGTTGGTGATAACTTACAAGGTAAAGGTCTTTTATAACAATCAAAAT
TTGAACTGGGATGCAGCTATAAATCATGAGCAGGAAAGAAAACAGAGTATATTAAAATTTTTCTCTTTGTTTACAAATGT
TAAGGGAATTTCGACAAGTGTAAAACGTCGTTCATTTTTAGATGGTATTTTAAAGCTTATTTCTAAAACGCCATCGCGTT
TATGGACTAACTTATTTGTGAGGGCATTTCTAAGAAGCTCAGATTATCTTGGTTTAACAATAAGGTTGGTAACTTTAAAT
ATCTTATCAGTCATCTTTGTTAACGAAACCTACCTCGCCCTTGCTCTGGCATTTGTATTTAACTACTTATTATTGTTCCA
ACTATTAGCTTTAGGTCACCATTATGATTATCAATACATGAATCAGCTCTATCTAGTTAGATTAAATGCTAAAGCAAGTC
AGCTAAAAGGTTTTCTCAGAGTATTATCATATGCTGTGACAGTAATTGATAGCATACTTATAAGAGAATTGAAACCTGTT
ATATTATTGATAGTTTTGATGTTAATTGTGACGGAATATTACATCCCTTACAAAATAAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

47.674

100

0.477

  pptB Streptococcus salivarius strain HSISS4

47.384

100

0.474