Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8628_RS03085 Genome accession   NZ_AP028335
Coordinates   587567..588340 (+) Length   257 a.a.
NCBI ID   WP_052774570.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10174     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 582567..593340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS03070 (B10174_06020) - 583416..585350 (-) 1935 WP_052774572.1 RNB domain-containing ribonuclease -
  R8628_RS03075 (B10174_06030) ilvC 585469..586491 (+) 1023 WP_052774571.1 ketol-acid reductoisomerase -
  R8628_RS03080 (B10174_06040) - 586495..587577 (+) 1083 WP_002869356.1 divergent polysaccharide deacetylase family protein -
  R8628_RS03085 (B10174_06050) dprA 587567..588340 (+) 774 WP_052774570.1 DNA-processing protein DprA Machinery gene
  R8628_RS03090 (B10174_06060) ruvX 588337..588720 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8628_RS03095 (B10174_06070) - 588749..589588 (+) 840 WP_002859985.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8628_RS03100 (B10174_06080) msrA 589764..590261 (-) 498 WP_002898554.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8628_RS03105 (B10174_06090) ppa 590302..590820 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8628_RS03110 (B10174_06100) adk 590830..591408 (-) 579 WP_002859580.1 adenylate kinase -
  R8628_RS03115 (B10174_06110) aspS 591405..593156 (-) 1752 WP_002890710.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28776.55 Da        Isoelectric Point: 7.0848

>NTDB_id=104355 R8628_RS03085 WP_052774570.1 587567..588340(+) (dprA) [Campylobacter jejuni strain BCH-10174]
MASEILPDEFLELFQDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLGESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104355 R8628_RS03085 WP_052774570.1 587567..588340(+) (dprA) [Campylobacter jejuni strain BCH-10174]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAGCTTTTTCAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCCAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGGAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment