Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ABNX08_RS01685 | Genome accession | NZ_CP168265 |
| Coordinates | 335643..336845 (-) | Length | 400 a.a. |
| NCBI ID | WP_349605439.1 | Uniprot ID | - |
| Organism | Cupriavidus sp. DF5525 strain 73-1 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 330643..341845
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABNX08_RS01660 (ABNX08_001660) | ntrB | 330653..331558 (-) | 906 | WP_022533432.1 | nitrate ABC transporter permease | - |
| ABNX08_RS01665 (ABNX08_001665) | - | 331620..332930 (-) | 1311 | WP_022533433.1 | CmpA/NrtA family ABC transporter substrate-binding protein | - |
| ABNX08_RS01670 (ABNX08_001670) | - | 333327..333974 (-) | 648 | WP_349605437.1 | ANTAR domain-containing protein | - |
| ABNX08_RS01675 (ABNX08_001675) | - | 334217..334918 (+) | 702 | WP_022533435.1 | fumarylacetoacetate hydrolase family protein | - |
| ABNX08_RS01680 (ABNX08_001680) | maiA | 334923..335570 (+) | 648 | WP_022533436.1 | maleylacetoacetate isomerase | - |
| ABNX08_RS01685 (ABNX08_001685) | pilA | 335643..336845 (-) | 1203 | WP_349605439.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ABNX08_RS01690 (ABNX08_001690) | - | 337062..338609 (+) | 1548 | WP_022533438.1 | pitrilysin family protein | - |
| ABNX08_RS01695 (ABNX08_001695) | - | 338619..340010 (+) | 1392 | WP_349605440.1 | pitrilysin family protein | - |
| ABNX08_RS01700 (ABNX08_001700) | rsmD | 340099..340785 (+) | 687 | WP_022533440.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ABNX08_RS01705 (ABNX08_001705) | coaD | 341005..341490 (+) | 486 | WP_022533441.1 | pantetheine-phosphate adenylyltransferase | - |
| ABNX08_RS01710 (ABNX08_001710) | - | 341559..341819 (+) | 261 | WP_010814370.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
Sequence
Protein
Download Length: 400 a.a. Molecular weight: 42262.20 Da Isoelectric Point: 7.3628
>NTDB_id=1043549 ABNX08_RS01685 WP_349605439.1 335643..336845(-) (pilA) [Cupriavidus sp. DF5525 strain 73-1]
MFSFWKKRKAEPAPVEAPAPAPAPAEAPAPAPTPAPAPAPIPAPTPVPVPVPTPVPAQVPPPAPAPVAAPIPAPAPAPIP
VPVPTPAEALELVPPPAPTAEARQGWMHRLRTGLSKTSRNIGTLFVGVKVDEALFEELETALLMADAGVEATEYLLGELR
KRVKSERIESAEGVKAALRDLLTQLLRPLEKTMALGREQPLVMMIAGVNGAGKTTSIGKLCKHFQRYDQKVLLAAGDTFR
AAAREQLTIWGERNNVTVVAQESGDPAAVIFDAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHE
VLLVIDANTGQNALQQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFRADEFAEALLG
MFSFWKKRKAEPAPVEAPAPAPAPAEAPAPAPTPAPAPAPIPAPTPVPVPVPTPVPAQVPPPAPAPVAAPIPAPAPAPIP
VPVPTPAEALELVPPPAPTAEARQGWMHRLRTGLSKTSRNIGTLFVGVKVDEALFEELETALLMADAGVEATEYLLGELR
KRVKSERIESAEGVKAALRDLLTQLLRPLEKTMALGREQPLVMMIAGVNGAGKTTSIGKLCKHFQRYDQKVLLAAGDTFR
AAAREQLTIWGERNNVTVVAQESGDPAAVIFDAVNAAKARGIDIVMADTAGRLPTQLHLMEELKKVKRVISKAMPSAPHE
VLLVIDANTGQNALQQTRAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEKVEDLQPFRADEFAEALLG
Nucleotide
Download Length: 1203 bp
>NTDB_id=1043549 ABNX08_RS01685 WP_349605439.1 335643..336845(-) (pilA) [Cupriavidus sp. DF5525 strain 73-1]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAGCCCGCGCCTGTCGAGGCCCCCGCCCCGGCACCCGCTCCGGCCGAGGC
GCCTGCGCCCGCCCCAACCCCTGCGCCCGCGCCGGCGCCAATCCCTGCGCCGACACCCGTCCCCGTTCCGGTCCCGACGC
CAGTCCCCGCGCAGGTGCCACCACCGGCCCCGGCCCCCGTGGCGGCTCCGATCCCCGCGCCAGCGCCCGCACCCATTCCG
GTGCCGGTCCCGACGCCGGCCGAGGCGCTGGAACTGGTCCCACCGCCCGCGCCCACGGCCGAAGCCAGACAGGGCTGGAT
GCACCGCTTGCGCACGGGACTGTCCAAGACCAGCCGCAACATCGGCACGCTGTTCGTCGGCGTCAAGGTCGACGAGGCGC
TGTTCGAGGAGCTGGAAACCGCGCTGCTGATGGCCGATGCCGGCGTTGAAGCCACCGAATACCTGCTGGGCGAGCTGCGC
AAGCGGGTCAAGTCCGAGCGCATCGAGTCGGCCGAAGGCGTCAAGGCCGCGCTGCGCGACCTGCTGACGCAGCTGCTGCG
CCCGCTGGAAAAGACCATGGCGCTGGGCCGCGAGCAACCGCTGGTGATGATGATCGCGGGTGTCAACGGTGCCGGCAAGA
CCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGCGCTACGACCAGAAGGTGCTGCTGGCCGCAGGCGACACCTTCCGC
GCCGCCGCGCGCGAGCAGCTGACGATCTGGGGCGAGCGCAACAACGTCACCGTGGTGGCGCAGGAAAGCGGCGACCCGGC
CGCGGTGATCTTCGACGCGGTCAACGCGGCCAAGGCGCGGGGCATCGACATCGTGATGGCCGACACCGCCGGCCGCCTGC
CGACACAGCTGCACCTGATGGAAGAGCTGAAGAAGGTCAAGCGCGTGATCAGCAAGGCCATGCCGAGCGCGCCGCACGAG
GTGTTGCTGGTGATCGACGCCAATACCGGCCAGAACGCCCTGCAGCAAACCCGCGCCTTCGACGACGCGCTGGGCCTGAC
CGGGCTGATCGTGACCAAGCTCGACGGTACTGCCAAGGGCGGCATCCTGGCGGCGATCGCGCGCCAGCGGCCGGTGCCGG
TCTACTTCATCGGCGTGGGCGAGAAGGTGGAGGACCTGCAGCCGTTCAGGGCGGATGAGTTTGCCGAGGCGCTGCTGGGA
TAA
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCCGAGCCCGCGCCTGTCGAGGCCCCCGCCCCGGCACCCGCTCCGGCCGAGGC
GCCTGCGCCCGCCCCAACCCCTGCGCCCGCGCCGGCGCCAATCCCTGCGCCGACACCCGTCCCCGTTCCGGTCCCGACGC
CAGTCCCCGCGCAGGTGCCACCACCGGCCCCGGCCCCCGTGGCGGCTCCGATCCCCGCGCCAGCGCCCGCACCCATTCCG
GTGCCGGTCCCGACGCCGGCCGAGGCGCTGGAACTGGTCCCACCGCCCGCGCCCACGGCCGAAGCCAGACAGGGCTGGAT
GCACCGCTTGCGCACGGGACTGTCCAAGACCAGCCGCAACATCGGCACGCTGTTCGTCGGCGTCAAGGTCGACGAGGCGC
TGTTCGAGGAGCTGGAAACCGCGCTGCTGATGGCCGATGCCGGCGTTGAAGCCACCGAATACCTGCTGGGCGAGCTGCGC
AAGCGGGTCAAGTCCGAGCGCATCGAGTCGGCCGAAGGCGTCAAGGCCGCGCTGCGCGACCTGCTGACGCAGCTGCTGCG
CCCGCTGGAAAAGACCATGGCGCTGGGCCGCGAGCAACCGCTGGTGATGATGATCGCGGGTGTCAACGGTGCCGGCAAGA
CCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGCGCTACGACCAGAAGGTGCTGCTGGCCGCAGGCGACACCTTCCGC
GCCGCCGCGCGCGAGCAGCTGACGATCTGGGGCGAGCGCAACAACGTCACCGTGGTGGCGCAGGAAAGCGGCGACCCGGC
CGCGGTGATCTTCGACGCGGTCAACGCGGCCAAGGCGCGGGGCATCGACATCGTGATGGCCGACACCGCCGGCCGCCTGC
CGACACAGCTGCACCTGATGGAAGAGCTGAAGAAGGTCAAGCGCGTGATCAGCAAGGCCATGCCGAGCGCGCCGCACGAG
GTGTTGCTGGTGATCGACGCCAATACCGGCCAGAACGCCCTGCAGCAAACCCGCGCCTTCGACGACGCGCTGGGCCTGAC
CGGGCTGATCGTGACCAAGCTCGACGGTACTGCCAAGGGCGGCATCCTGGCGGCGATCGCGCGCCAGCGGCCGGTGCCGG
TCTACTTCATCGGCGTGGGCGAGAAGGTGGAGGACCTGCAGCCGTTCAGGGCGGATGAGTTTGCCGAGGCGCTGCTGGGA
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
50.355 |
100 |
0.533 |