Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8628_RS02890 Genome accession   NZ_AP028335
Coordinates   545773..546423 (-) Length   216 a.a.
NCBI ID   WP_002852117.1    Uniprot ID   Q0PAS3
Organism   Campylobacter jejuni strain BCH-10174     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 540773..551423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8628_RS02855 (B10174_05570) - 541139..542143 (+) 1005 WP_317653671.1 hypothetical protein -
  R8628_RS02860 (B10174_05580) tlyA 542140..542901 (+) 762 WP_002854799.1 TlyA family RNA methyltransferase -
  R8628_RS02865 (B10174_05590) ribF 542867..543721 (+) 855 WP_002873780.1 bifunctional riboflavin kinase/FAD synthetase -
  R8628_RS02870 (B10174_05600) cmoA 543708..544418 (+) 711 WP_317653579.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8628_RS02875 (B10174_05610) - 544408..544629 (-) 222 WP_002859102.1 EexN family lipoprotein -
  R8628_RS02880 (B10174_05620) - 544626..545072 (-) 447 WP_317653581.1 hypothetical protein -
  R8628_RS02885 (B10174_05630) - 545130..545762 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  R8628_RS02890 (B10174_05640) CJE0566 545773..546423 (-) 651 WP_002852117.1 DNA/RNA non-specific endonuclease Regulator
  R8628_RS02895 (B10174_05650) nth 546420..547046 (-) 627 WP_002852225.1 endonuclease III -
  R8628_RS02900 (B10174_05660) peb4 547127..547948 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  R8628_RS02905 (B10174_05670) fbaA 547948..549012 (+) 1065 WP_002852272.1 class II fructose-bisphosphate aldolase -
  R8628_RS02910 (B10174_05680) - 549107..550549 (+) 1443 WP_002852205.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25472.10 Da        Isoelectric Point: 9.6573

>NTDB_id=104354 R8628_RS02890 WP_002852117.1 545773..546423(-) (CJE0566) [Campylobacter jejuni strain BCH-10174]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104354 R8628_RS02890 WP_002852117.1 545773..546423(-) (CJE0566) [Campylobacter jejuni strain BCH-10174]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACCACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0PAS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.543

91.204

0.634
  CJE1441 Campylobacter jejuni RM1221

69.036

91.204

0.63

Multiple sequence alignment