Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ACD269_RS02490 Genome accession   NZ_CP168260
Coordinates   483920..484651 (+) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain FC2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 478920..489651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD269_RS02465 (ACD269_02465) - 480667..481071 (+) 405 WP_000343113.1 hypothetical protein -
  ACD269_RS02470 (ACD269_02470) dnaJ 481286..482422 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ACD269_RS02475 (ACD269_02475) - 482744..482983 (-) 240 WP_134743919.1 hypothetical protein -
  ACD269_RS02480 (ACD269_02480) - 483145..483432 (-) 288 WP_000777760.1 hypothetical protein -
  ACD269_RS02485 (ACD269_02485) - 483442..483852 (-) 411 WP_001278304.1 HIT family protein -
  ACD269_RS02490 (ACD269_02490) pptA 483920..484651 (+) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ACD269_RS02495 (ACD269_02495) - 484648..485697 (+) 1050 WP_000653750.1 ABC transporter permease -
  ACD269_RS02500 (ACD269_02500) - 485760..486089 (-) 330 WP_000132584.1 hypothetical protein -
  ACD269_RS02505 (ACD269_02505) - 486366..486704 (+) 339 WP_000682136.1 LytTR family DNA-binding domain-containing protein -
  ACD269_RS02510 (ACD269_02510) comE/blpR 486709..487446 (+) 738 WP_001219137.1 LytTR family DNA-binding domain-containing protein Regulator
  ACD269_RS02515 (ACD269_02515) - 487460..488800 (+) 1341 WP_001099895.1 sensor histidine kinase -
  ACD269_RS02520 (ACD269_02520) blpC 488845..489000 (-) 156 WP_000358814.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=1043480 ACD269_RS02490 WP_000889923.1 483920..484651(+) (pptA) [Streptococcus pneumoniae strain FC2]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1043480 ACD269_RS02490 WP_000889923.1 483920..484651(+) (pptA) [Streptococcus pneumoniae strain FC2]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAAAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment