Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEN3H_RS02160 Genome accession   NZ_CP168231
Coordinates   451107..451736 (-) Length   209 a.a.
NCBI ID   WP_025470493.1    Uniprot ID   -
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446107..456736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS02125 (ACEN3H_02125) mlaE 446436..447212 (+) 777 WP_002117010.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  ACEN3H_RS02130 (ACEN3H_02130) - 447212..447892 (+) 681 WP_373358470.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACEN3H_RS02135 (ACEN3H_02135) - 447923..448564 (+) 642 WP_002116826.1 phospholipid-binding protein MlaC -
  ACEN3H_RS02140 (ACEN3H_02140) - 448576..448863 (+) 288 WP_016143579.1 lipid asymmetry maintenance protein MlaB -
  ACEN3H_RS02145 (ACEN3H_02145) - 448936..449949 (-) 1014 WP_031949440.1 magnesium and cobalt transport protein CorA -
  ACEN3H_RS02150 (ACEN3H_02150) - 450108..450689 (+) 582 WP_016143577.1 TIGR00730 family Rossman fold protein -
  ACEN3H_RS02155 (ACEN3H_02155) - 450704..451105 (+) 402 WP_125697966.1 NUDIX domain-containing protein -
  ACEN3H_RS02160 (ACEN3H_02160) comF 451107..451736 (-) 630 WP_025470493.1 ComF family protein Machinery gene
  ACEN3H_RS02165 (ACEN3H_02165) recG 451729..453774 (-) 2046 WP_373358471.1 ATP-dependent DNA helicase RecG -
  ACEN3H_RS02170 (ACEN3H_02170) - 453795..454610 (+) 816 WP_373358472.1 SDR family NAD(P)-dependent oxidoreductase -
  ACEN3H_RS02175 (ACEN3H_02175) - 454690..455673 (+) 984 WP_373358473.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24486.66 Da        Isoelectric Point: 9.7580

>NTDB_id=1043309 ACEN3H_RS02160 WP_025470493.1 451107..451736(-) (comF) [Acinetobacter lactucae strain 2024CK-01095]
MFSFLNFQHLIQLFSPCSLCELGMREKYSLCKDCWEQLPWLKQTIQRNNQSVLVACDYAYPVNRIIQQFKYEQKLHYQIL
LGEILKQLKFPKVQAIVPMPISNQRLIERGFNQSLLLANILSKHLKIPVWQPIQRLNEHSQKGLSRLERFENIEQQFLPY
HHEKRRYRRVLIIDDVITTGSSVHALSQALKQLGCTSIHTACLAATPKS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1043309 ACEN3H_RS02160 WP_025470493.1 451107..451736(-) (comF) [Acinetobacter lactucae strain 2024CK-01095]
ATGTTTAGTTTTTTAAACTTCCAACATCTTATTCAGTTATTTTCACCTTGCTCATTGTGCGAGTTAGGCATGCGAGAAAA
ATACTCGCTCTGTAAAGACTGTTGGGAACAGCTACCTTGGCTTAAACAAACGATTCAACGTAATAATCAATCTGTTCTTG
TGGCCTGTGACTATGCTTATCCAGTTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTATCAAATCTTA
TTAGGGGAAATTTTAAAACAATTAAAATTTCCTAAAGTACAAGCTATTGTACCCATGCCTATTTCCAATCAGCGTTTAAT
TGAACGTGGTTTCAATCAGTCATTATTACTTGCCAATATCTTAAGCAAACACTTAAAAATACCTGTTTGGCAACCGATTC
AACGTTTAAACGAGCACTCTCAAAAAGGACTTTCTCGACTAGAGCGCTTTGAAAATATCGAACAACAATTTTTACCCTAT
CATCATGAGAAACGACGTTATCGCCGCGTTCTCATTATTGATGACGTGATAACTACGGGAAGCTCTGTTCATGCGCTCAG
TCAAGCCCTTAAACAATTAGGCTGCACATCCATTCATACGGCTTGTCTAGCAGCAACGCCGAAGAGTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

84.211

100

0.842
  comF Acinetobacter baumannii D1279779

83.254

100

0.833

Multiple sequence alignment