Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ACEN3N_RS19175 Genome accession   NZ_CP168228
Coordinates   4056315..4056956 (+) Length   213 a.a.
NCBI ID   WP_373350560.1    Uniprot ID   -
Organism   Acinetobacter bereziniae strain 2024CK-01176     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4051315..4061956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3N_RS19165 (ACEN3N_19165) - 4053271..4054047 (-) 777 WP_151959794.1 NAD(P)H-binding protein -
  ACEN3N_RS19170 (ACEN3N_19170) recG 4054094..4056139 (+) 2046 WP_151959795.1 ATP-dependent DNA helicase RecG -
  ACEN3N_RS19175 (ACEN3N_19175) comF 4056315..4056956 (+) 642 WP_373350560.1 ComF family protein Machinery gene
  ACEN3N_RS19180 (ACEN3N_19180) - 4057002..4057397 (-) 396 WP_171499967.1 NUDIX domain-containing protein -
  ACEN3N_RS19185 (ACEN3N_19185) - 4057518..4058114 (-) 597 WP_005034160.1 TIGR00730 family Rossman fold protein -
  ACEN3N_RS19190 (ACEN3N_19190) - 4058273..4059286 (+) 1014 WP_004825220.1 magnesium and cobalt transport protein CorA -
  ACEN3N_RS19195 (ACEN3N_19195) - 4059406..4059693 (-) 288 WP_004825222.1 hypothetical protein -
  ACEN3N_RS19200 (ACEN3N_19200) - 4059728..4060351 (-) 624 WP_004825224.1 phospholipid-binding protein MlaC -
  ACEN3N_RS19205 (ACEN3N_19205) - 4060372..4061049 (-) 678 WP_004825227.1 outer membrane lipid asymmetry maintenance protein MlaD -
  ACEN3N_RS19210 (ACEN3N_19210) mlaE 4061049..4061828 (-) 780 WP_004725633.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24775.80 Da        Isoelectric Point: 9.2586

>NTDB_id=1043283 ACEN3N_RS19175 WP_373350560.1 4056315..4056956(+) (comF) [Acinetobacter bereziniae strain 2024CK-01176]
MLQFIHQLLHKGVQCISPCLLCGIDQQQAHSLCQDCWNQLPWYKQSIERHEQQILCAHHYDFPIDRIIQTYKYEQQLQYQ
NVLAHSLLNLRFSRVQAIVPMPISTERLNERGYNQMLIVAKIMAKQSKIPVWQPVVRQAQHSQKGLSRVERLENIEHQFR
TIQSEKRKYKKVLIVDDVVTTGSSIHALTQALQRLGCQQISSLCIAAAHPSMK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1043283 ACEN3N_RS19175 WP_373350560.1 4056315..4056956(+) (comF) [Acinetobacter bereziniae strain 2024CK-01176]
ATGCTCCAATTTATCCATCAACTGCTCCATAAAGGCGTTCAATGTATTTCTCCATGCTTACTGTGCGGCATTGACCAGCA
ACAAGCTCACTCCTTATGTCAAGACTGTTGGAATCAACTCCCTTGGTACAAACAATCCATAGAGCGACATGAACAACAAA
TACTTTGCGCACATCACTATGATTTCCCAATTGATCGCATCATTCAAACTTATAAATATGAGCAACAATTACAATATCAA
AACGTGCTTGCACATAGTTTATTGAACTTAAGATTTTCCAGAGTTCAAGCGATTGTTCCCATGCCCATTTCAACCGAGCG
CCTTAATGAACGGGGTTATAACCAAATGTTGATCGTGGCTAAAATTATGGCAAAACAATCAAAAATTCCTGTTTGGCAAC
CCGTGGTTCGACAAGCTCAACATTCACAAAAAGGCTTAAGTCGAGTTGAACGACTGGAAAATATTGAGCATCAATTTCGA
ACCATTCAATCCGAAAAGAGAAAATATAAAAAAGTATTGATTGTGGATGATGTGGTCACAACAGGAAGTTCAATTCATGC
CCTCACCCAAGCTTTACAACGCTTGGGCTGTCAGCAGATTTCCAGTCTTTGTATTGCAGCAGCACATCCATCTATGAAAT
GA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(118-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.606

92.958

0.563
  comF Acinetobacter baumannii D1279779

60.101

92.958

0.559

Multiple sequence alignment