Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxQ   Type   Regulator
Locus tag   ACEL84_RS19135 Genome accession   NZ_CP168213
Coordinates   555166..557730 (+) Length   854 a.a.
NCBI ID   WP_261897612.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 550166..562730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS19100 (ACEL84_19100) - 550255..550503 (-) 249 WP_261897605.1 YgjV family protein -
  ACEL84_RS19105 (ACEL84_19105) - 550887..551201 (-) 315 WP_261897606.1 DUF496 family protein -
  ACEL84_RS19110 (ACEL84_19110) - 551390..551596 (+) 207 WP_261897607.1 hypothetical protein -
  ACEL84_RS19115 (ACEL84_19115) - 551618..552274 (+) 657 WP_261897608.1 YceH family protein -
  ACEL84_RS19120 (ACEL84_19120) - 552278..552586 (+) 309 WP_261897609.1 GIY-YIG nuclease family protein -
  ACEL84_RS19125 (ACEL84_19125) - 552675..553823 (+) 1149 WP_261897610.1 conjugal transfer protein TraF -
  ACEL84_RS19130 (ACEL84_19130) luxP 554054..555151 (+) 1098 WP_373332847.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  ACEL84_RS19135 (ACEL84_19135) luxQ 555166..557730 (+) 2565 WP_261897612.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  ACEL84_RS19140 (ACEL84_19140) - 557744..558268 (-) 525 WP_261897613.1 hypothetical protein -
  ACEL84_RS19145 (ACEL84_19145) - 558419..558787 (-) 369 WP_261897614.1 YgiW/YdeI family stress tolerance OB fold protein -
  ACEL84_RS19150 (ACEL84_19150) modA 559521..560300 (+) 780 WP_261897615.1 molybdate ABC transporter substrate-binding protein -
  ACEL84_RS19155 (ACEL84_19155) modB 560290..561000 (+) 711 WP_373332848.1 molybdate ABC transporter permease subunit -
  ACEL84_RS19160 (ACEL84_19160) modC 560997..562103 (+) 1107 WP_261897616.1 molybdenum ABC transporter ATP-binding protein ModC -

Sequence


Protein


Download         Length: 854 a.a.        Molecular weight: 96536.26 Da        Isoelectric Point: 5.1471

>NTDB_id=1043120 ACEL84_RS19135 WP_261897612.1 555166..557730(+) (luxQ) [Vibrio porteresiae strain MSSRF31]
MSVITGPIRPKRRIANFISFAIVVVLGALTLSVLFQSYQISSRLMSQEVLRTSGQTTNLVQSLFNFRLATVQIHQDSSAQ
SQNLVEALQSRDPQTIDQYFLSVDQLELSNTPDIRFITTMDGLIWDDGNAQFYGLSQDDMTKVIRRVAFNSNWHLISSPS
QLDMIYLMVRRSPLINQATGEVAGFLYVAVVLNNNYALIETMRDGSNSQNLVLTVGKKVIASTLNGNEPYREADVIKSGQ
SDTLYNRNMVSRASLEVEGVPTYLTVYSVQNNQNALRLRDNYYFWMIFALVAMVIVALITRWWIQRRIESEIACLMTYTH
QVADKGRRNPFPGSTIYEFDHFGRTLEHTFSRLSEQEKQFEDLFNFTVSPTVLWSTDGQMIKMNPSAKQQFLHQFEEDKP
LLDGLERQLRDKIAEAAQGNIVKEVNTELGGKMFRWNLSPIEVNDKIESIIAQGYDITSIAEAEKQSRIARKEAEESARL
RADFLAKMSHELRTPLNGILGVSQLLKRTVNDKEQVEQVNVLCSSGEHLLAVLNDILDFSRIEQGKFRIQKSQFRLSDVV
YAIERIYRPLCAEKGITLQLNSNIVEDVMVVGDQVRINQILFNLLNNAVKFTHYGEIDVDLILLVTESQSTLKVRIKDSG
IGIRSEDMRIIFEPFVQAESTTTREYGGSGLGLAIVNSLIEMLGGTIRVESEFGKGTEFNLRIPLPVAQVEEREIDAKEA
DVKFTLFDEPLKVLLVEDNHTNAFIARAFCKKYGLDVEWVTDGVQAIEKAKEQQFDLILMDNQLPYLGGIDATRVIKQEL
KLSAAVYACTADGMESTRDAFIAAGAEYVLVKPLKETSLNQALVYFKQQRQVTG

Nucleotide


Download         Length: 2565 bp        

>NTDB_id=1043120 ACEL84_RS19135 WP_261897612.1 555166..557730(+) (luxQ) [Vibrio porteresiae strain MSSRF31]
GTGAGTGTGATAACCGGCCCAATTAGACCCAAAAGACGTATCGCGAACTTCATTAGTTTTGCGATCGTTGTGGTGCTTGG
TGCATTGACTCTAAGTGTATTGTTCCAGAGTTATCAAATCAGCAGTCGTTTGATGTCGCAGGAGGTACTGCGCACGTCAG
GGCAAACCACTAATTTAGTACAAAGCCTATTTAACTTTCGTTTAGCAACCGTTCAGATTCACCAAGACAGCAGTGCTCAA
AGTCAAAACTTGGTTGAGGCACTGCAATCGCGCGATCCCCAGACCATTGATCAATATTTTCTCAGCGTTGATCAGCTTGA
ACTCTCTAACACACCTGATATCCGCTTTATTACCACGATGGATGGACTCATCTGGGACGATGGCAATGCGCAATTTTATG
GGCTTAGCCAAGATGATATGACTAAGGTGATTCGTCGTGTGGCCTTTAACAGCAACTGGCACTTGATCTCTTCACCTTCG
CAACTCGATATGATTTATCTCATGGTGCGCCGTTCTCCTTTGATTAATCAAGCAACTGGAGAGGTAGCCGGCTTTTTGTA
TGTTGCGGTGGTGCTCAATAATAACTATGCGTTAATCGAGACCATGCGCGATGGCAGTAATTCGCAAAACTTGGTACTCA
CGGTGGGTAAAAAGGTCATCGCTTCAACACTCAATGGTAATGAGCCCTATCGCGAAGCGGATGTGATCAAATCGGGTCAA
AGTGACACCCTCTATAACCGGAATATGGTGAGCCGAGCCTCGTTAGAGGTGGAAGGTGTACCAACCTATTTGACTGTCTA
TTCCGTACAAAATAACCAAAACGCACTCAGACTCAGAGATAACTACTATTTCTGGATGATATTTGCGTTGGTCGCGATGG
TAATTGTGGCTTTGATTACTCGTTGGTGGATTCAACGACGCATCGAATCGGAAATTGCCTGCTTGATGACCTACACCCAT
CAAGTCGCGGATAAAGGGCGACGCAATCCGTTTCCTGGTTCAACCATTTATGAGTTTGACCACTTTGGTCGTACCTTAGA
GCACACCTTTTCGCGTCTTTCTGAACAAGAAAAACAATTTGAAGATTTGTTCAACTTCACCGTATCGCCGACTGTGTTGT
GGTCTACCGATGGGCAGATGATCAAGATGAACCCATCGGCCAAACAGCAATTTTTGCATCAGTTTGAAGAAGACAAGCCA
TTATTGGATGGGTTAGAGCGACAACTGAGGGACAAAATTGCTGAGGCTGCGCAAGGTAACATCGTCAAAGAGGTGAATAC
GGAACTGGGCGGTAAGATGTTCCGCTGGAACTTGTCGCCGATTGAAGTGAATGACAAAATTGAGTCGATCATCGCTCAAG
GTTATGACATTACCAGTATTGCAGAAGCGGAAAAACAGAGCCGTATAGCGCGTAAAGAAGCAGAAGAGTCGGCGCGTCTG
CGTGCCGATTTCTTAGCCAAAATGAGTCACGAGTTAAGAACTCCGCTCAACGGTATTTTAGGCGTGTCACAACTGCTTAA
ACGTACTGTGAATGACAAAGAGCAAGTTGAGCAGGTGAATGTCTTGTGCAGCAGTGGTGAGCATCTCCTCGCGGTACTGA
ACGATATTCTCGATTTCTCACGTATTGAGCAAGGTAAGTTCCGCATTCAGAAGAGTCAGTTCCGTTTGTCTGACGTTGTT
TATGCGATTGAACGTATTTACCGACCTCTATGCGCAGAGAAGGGCATCACGCTGCAACTCAATTCCAACATCGTTGAAGA
TGTCATGGTGGTTGGCGATCAGGTTCGTATTAACCAGATTTTGTTTAACCTGCTCAATAACGCGGTGAAATTTACCCATT
ACGGCGAAATTGATGTTGATTTAATACTGCTGGTGACGGAAAGCCAATCGACACTCAAAGTACGAATTAAAGACTCGGGT
ATTGGGATTCGCAGTGAAGATATGCGCATTATCTTTGAACCGTTTGTCCAAGCAGAATCAACGACGACACGTGAATATGG
TGGCAGTGGCTTAGGCCTTGCGATCGTCAATAGTTTGATTGAAATGCTGGGCGGTACCATTCGAGTCGAATCTGAATTTG
GTAAGGGGACAGAGTTTAATCTGCGTATTCCTCTGCCTGTGGCTCAAGTAGAAGAGCGTGAAATTGATGCTAAAGAAGCT
GACGTGAAATTCACCCTGTTTGATGAGCCGTTAAAAGTGCTGCTCGTAGAGGATAACCACACCAACGCCTTTATTGCGCG
CGCTTTCTGTAAAAAATACGGTTTGGATGTAGAGTGGGTGACCGATGGCGTTCAAGCGATTGAGAAAGCAAAAGAGCAGC
AGTTTGATCTGATCTTAATGGATAATCAATTGCCTTATCTTGGTGGGATCGATGCAACTCGCGTGATCAAACAAGAGCTT
AAACTGTCTGCGGCGGTTTATGCGTGTACAGCTGATGGCATGGAATCAACCCGGGATGCCTTTATCGCTGCAGGTGCGGA
ATACGTCTTGGTAAAACCACTCAAAGAAACCAGCTTAAATCAGGCGCTGGTCTATTTTAAACAGCAGCGCCAAGTGACTG
GGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxQ Vibrio cholerae strain A1552

60.235

99.532

0.6


Multiple sequence alignment