Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | ACEL84_RS14130 | Genome accession | NZ_CP168212 |
| Coordinates | 3110321..3111190 (+) | Length | 289 a.a. |
| NCBI ID | WP_261893621.1 | Uniprot ID | - |
| Organism | Vibrio porteresiae strain MSSRF31 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3105321..3116190
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEL84_RS14110 (ACEL84_14110) | nadC | 3105837..3106724 (+) | 888 | WP_261893616.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| ACEL84_RS14115 (ACEL84_14115) | - | 3106922..3107341 (+) | 420 | WP_315972737.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| ACEL84_RS14120 (ACEL84_14120) | - | 3107338..3108993 (+) | 1656 | WP_261893618.1 | GspE/PulE family protein | - |
| ACEL84_RS14125 (ACEL84_14125) | - | 3108990..3110207 (+) | 1218 | WP_261893620.1 | type II secretion system F family protein | - |
| ACEL84_RS14130 (ACEL84_14130) | pilD | 3110321..3111190 (+) | 870 | WP_261893621.1 | A24 family peptidase | Machinery gene |
| ACEL84_RS14135 (ACEL84_14135) | coaE | 3111192..3111800 (+) | 609 | WP_261893623.1 | dephospho-CoA kinase | - |
| ACEL84_RS14140 (ACEL84_14140) | zapD | 3111832..3112572 (+) | 741 | WP_261893625.1 | cell division protein ZapD | - |
| ACEL84_RS14145 (ACEL84_14145) | yacG | 3112615..3112809 (+) | 195 | WP_261893627.1 | DNA gyrase inhibitor YacG | - |
| ACEL84_RS14150 (ACEL84_14150) | - | 3112877..3113506 (+) | 630 | WP_261893629.1 | sigma-70 family RNA polymerase sigma factor | - |
| ACEL84_RS14155 (ACEL84_14155) | - | 3113503..3113709 (+) | 207 | WP_261893630.1 | zf-HC2 domain-containing protein | - |
| ACEL84_RS14160 (ACEL84_14160) | - | 3113797..3114072 (+) | 276 | WP_261893632.1 | DUF2282 domain-containing protein | - |
| ACEL84_RS14165 (ACEL84_14165) | - | 3114092..3114976 (+) | 885 | WP_261893634.1 | DUF692 domain-containing protein | - |
| ACEL84_RS14170 (ACEL84_14170) | - | 3114960..3115718 (+) | 759 | WP_261893636.1 | DNA-binding domain-containing protein | - |
| ACEL84_RS14175 (ACEL84_14175) | - | 3115712..3116164 (+) | 453 | WP_261893638.1 | DoxX family protein | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32709.93 Da Isoelectric Point: 7.5855
>NTDB_id=1043111 ACEL84_RS14130 WP_261893621.1 3110321..3111190(+) (pilD) [Vibrio porteresiae strain MSSRF31]
MDIFIYYPWLFTLFATLFGLIIGSFLNVVIHRLPKMMEQEWRQECAESFPEYHIEPPKQTLSLSKPRSRCPKCHTQIRAI
DNIPVLSWLLLKGRCHHCHEPISARYPCVEIITALACYLLADRFGYSPYTLGLMFFTFVLIAATFIDFDTLLLPDQLTLP
LLWAGLAMALLGLTSVSLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILLSSLVGL
CFGLVQLKLQKQGLETAFPFGPYLAIAGWISLLWGNSIITWYLRSFLGW
MDIFIYYPWLFTLFATLFGLIIGSFLNVVIHRLPKMMEQEWRQECAESFPEYHIEPPKQTLSLSKPRSRCPKCHTQIRAI
DNIPVLSWLLLKGRCHHCHEPISARYPCVEIITALACYLLADRFGYSPYTLGLMFFTFVLIAATFIDFDTLLLPDQLTLP
LLWAGLAMALLGLTSVSLTDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQQLPIIILLSSLVGL
CFGLVQLKLQKQGLETAFPFGPYLAIAGWISLLWGNSIITWYLRSFLGW
Nucleotide
Download Length: 870 bp
>NTDB_id=1043111 ACEL84_RS14130 WP_261893621.1 3110321..3111190(+) (pilD) [Vibrio porteresiae strain MSSRF31]
ATGGACATATTCATTTATTACCCTTGGCTCTTCACTCTGTTTGCCACCCTCTTTGGCTTAATTATTGGTAGCTTTCTGAA
TGTCGTTATTCACCGCCTACCCAAGATGATGGAACAAGAGTGGCGCCAAGAGTGTGCAGAAAGTTTCCCTGAGTACCATA
TTGAACCGCCTAAGCAGACACTTTCTCTTAGCAAACCCCGTTCTCGCTGCCCAAAGTGCCATACGCAAATTCGCGCTATC
GATAACATTCCAGTGCTAAGTTGGTTGCTACTTAAAGGACGCTGCCATCACTGCCATGAACCGATTTCCGCCCGTTACCC
TTGTGTCGAAATCATTACCGCACTCGCGTGTTATCTGTTAGCCGACCGGTTCGGTTACAGCCCTTATACCTTAGGACTGA
TGTTTTTTACCTTTGTCTTAATCGCGGCCACGTTTATCGACTTTGATACTTTGCTTTTGCCGGATCAATTAACCCTGCCT
TTACTTTGGGCGGGATTAGCTATGGCATTATTGGGCCTGACTTCGGTATCGCTCACCGATGCCGTGATCGGCGCTATGGC
CGGATATTTGGTGCTTTGGTCTCTCTACTGGGCATTTAAGTTGCTCACAGGCAAAGAAGGGATGGGTTACGGTGACTTTA
AACTGTTAGCTGCATTAGGTGCTTGGCTAGGTTGGCAACAATTGCCGATCATCATTCTCCTTTCCTCCTTAGTGGGACTG
TGCTTTGGTTTAGTGCAACTAAAACTCCAAAAGCAAGGGCTAGAAACTGCGTTTCCGTTTGGACCTTATCTTGCTATTGC
CGGATGGATTAGCCTTCTTTGGGGTAACTCGATCATTACTTGGTATTTGCGTTCATTTTTAGGTTGGTAA
ATGGACATATTCATTTATTACCCTTGGCTCTTCACTCTGTTTGCCACCCTCTTTGGCTTAATTATTGGTAGCTTTCTGAA
TGTCGTTATTCACCGCCTACCCAAGATGATGGAACAAGAGTGGCGCCAAGAGTGTGCAGAAAGTTTCCCTGAGTACCATA
TTGAACCGCCTAAGCAGACACTTTCTCTTAGCAAACCCCGTTCTCGCTGCCCAAAGTGCCATACGCAAATTCGCGCTATC
GATAACATTCCAGTGCTAAGTTGGTTGCTACTTAAAGGACGCTGCCATCACTGCCATGAACCGATTTCCGCCCGTTACCC
TTGTGTCGAAATCATTACCGCACTCGCGTGTTATCTGTTAGCCGACCGGTTCGGTTACAGCCCTTATACCTTAGGACTGA
TGTTTTTTACCTTTGTCTTAATCGCGGCCACGTTTATCGACTTTGATACTTTGCTTTTGCCGGATCAATTAACCCTGCCT
TTACTTTGGGCGGGATTAGCTATGGCATTATTGGGCCTGACTTCGGTATCGCTCACCGATGCCGTGATCGGCGCTATGGC
CGGATATTTGGTGCTTTGGTCTCTCTACTGGGCATTTAAGTTGCTCACAGGCAAAGAAGGGATGGGTTACGGTGACTTTA
AACTGTTAGCTGCATTAGGTGCTTGGCTAGGTTGGCAACAATTGCCGATCATCATTCTCCTTTCCTCCTTAGTGGGACTG
TGCTTTGGTTTAGTGCAACTAAAACTCCAAAAGCAAGGGCTAGAAACTGCGTTTCCGTTTGGACCTTATCTTGCTATTGC
CGGATGGATTAGCCTTCTTTGGGGTAACTCGATCATTACTTGGTATTTGCGTTCATTTTTAGGTTGGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
72.222 |
99.654 |
0.72 |
| pilD | Vibrio cholerae strain A1552 |
69.792 |
99.654 |
0.696 |
| pilD | Acinetobacter nosocomialis M2 |
51.301 |
93.08 |
0.478 |
| pilD | Acinetobacter baumannii D1279779 |
51.301 |
93.08 |
0.478 |
| pilD | Neisseria gonorrhoeae MS11 |
46.667 |
98.616 |
0.46 |