Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   ACEL84_RS14060 Genome accession   NZ_CP168212
Coordinates   3092804..3093421 (+) Length   205 a.a.
NCBI ID   WP_261893607.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3087804..3098421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS14035 (ACEL84_14035) panC 3088287..3089165 (+) 879 WP_261893599.1 pantoate--beta-alanine ligase -
  ACEL84_RS14040 (ACEL84_14040) - 3089238..3090008 (-) 771 WP_261893601.1 ABC transporter permease -
  ACEL84_RS14045 (ACEL84_14045) - 3090017..3090931 (-) 915 WP_261893603.1 ABC transporter ATP-binding protein -
  ACEL84_RS14050 (ACEL84_14050) can 3091192..3091860 (+) 669 WP_261893604.1 carbonate dehydratase -
  ACEL84_RS14055 (ACEL84_14055) hpt 3091942..3092472 (-) 531 WP_261893606.1 hypoxanthine phosphoribosyltransferase -
  ACEL84_RS14060 (ACEL84_14060) hapR 3092804..3093421 (+) 618 WP_261893607.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  ACEL84_RS14065 (ACEL84_14065) lpdA 3093530..3094957 (-) 1428 WP_261893608.1 dihydrolipoyl dehydrogenase -
  ACEL84_RS14070 (ACEL84_14070) aceF 3095205..3097085 (-) 1881 WP_261893610.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23502.80 Da        Isoelectric Point: 5.5974

>NTDB_id=1043110 ACEL84_RS14060 WP_261893607.1 3092804..3093421(+) (hapR) [Vibrio porteresiae strain MSSRF31]
MDASIEKRPRTRLSPQKRKHQLMEIALEVFAKRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDDVLTFVVRQFSNFL
TDSIDLDLPARQNLLTISDGIVNLAIDDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQMLLKNMFAKAIERGELSSDYDA
EDMATLFHGICYSLFVQANRVRNESSVHKLVSHYLDMLCIYNEVA

Nucleotide


Download         Length: 618 bp        

>NTDB_id=1043110 ACEL84_RS14060 WP_261893607.1 3092804..3093421(+) (hapR) [Vibrio porteresiae strain MSSRF31]
ATGGATGCTTCAATAGAAAAACGCCCAAGAACCCGTTTATCACCTCAAAAACGTAAACACCAGCTAATGGAAATAGCTTT
AGAAGTGTTTGCCAAACGTGGGATTGGTCGTGGTGGTCACGCAGATATTGCGGATATCGCGCAAGTTTCAGTGGCAACAG
TATTTAACTATTTCCCTACTCGTGAAGATTTAGTAGATGACGTACTCACATTTGTTGTTCGTCAATTCTCAAACTTCCTA
ACCGACAGTATCGATCTCGATCTACCTGCTCGCCAAAACTTGTTGACTATCTCAGATGGTATCGTCAACTTAGCGATTGA
TGATTGTCACTGGCTAAAAGTATGGTTCGAATGGAGTGCTTCAACTCGTGATGAAGTATGGCCTCTATTTGTATCGACTA
ACCGTACTAACCAGATGTTACTTAAAAACATGTTTGCAAAAGCAATCGAACGCGGTGAACTTAGCAGCGATTACGACGCA
GAAGATATGGCAACCTTGTTCCACGGTATTTGTTACTCCCTTTTCGTACAAGCTAACCGTGTCCGCAATGAAAGCAGTGT
TCACAAACTAGTGAGCCACTACCTTGACATGCTATGCATCTATAACGAAGTAGCCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

77.114

98.049

0.756
  hapR Vibrio cholerae strain A1552

77.114

98.049

0.756
  opaR Vibrio parahaemolyticus RIMD 2210633

76.382

97.073

0.741

Multiple sequence alignment