Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACEL84_RS11930 Genome accession   NZ_CP168212
Coordinates   2610334..2611743 (-) Length   469 a.a.
NCBI ID   WP_261893081.1    Uniprot ID   -
Organism   Vibrio porteresiae strain MSSRF31     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2605334..2616743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEL84_RS11890 (ACEL84_11890) - 2605419..2605835 (-) 417 WP_261893074.1 CBS domain-containing protein -
  ACEL84_RS11895 (ACEL84_11895) moaE 2606011..2606463 (-) 453 WP_261893075.1 molybdopterin synthase catalytic subunit MoaE -
  ACEL84_RS11900 (ACEL84_11900) moaD 2606465..2606710 (-) 246 WP_261893076.1 molybdopterin synthase sulfur carrier subunit -
  ACEL84_RS11905 (ACEL84_11905) moaC 2606707..2607186 (-) 480 WP_261893077.1 cyclic pyranopterin monophosphate synthase MoaC -
  ACEL84_RS11910 (ACEL84_11910) moaB 2607199..2607705 (-) 507 WP_261893078.1 molybdenum cofactor biosynthesis protein B -
  ACEL84_RS11915 (ACEL84_11915) moaA 2607812..2608801 (-) 990 WP_261893079.1 GTP 3',8-cyclase MoaA -
  ACEL84_RS11920 (ACEL84_11920) - 2609110..2609997 (+) 888 WP_261896291.1 YvcK family protein -
  ACEL84_RS11925 (ACEL84_11925) luxU 2609989..2610327 (-) 339 WP_261893080.1 quorum-sensing phosphorelay protein LuxU -
  ACEL84_RS11930 (ACEL84_11930) luxO 2610334..2611743 (-) 1410 WP_261893081.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  ACEL84_RS11935 (ACEL84_11935) uvrB 2612024..2614054 (-) 2031 WP_261893083.1 excinuclease ABC subunit UvrB -
  ACEL84_RS11945 (ACEL84_11945) rsxA 2615147..2615728 (+) 582 WP_261893085.1 electron transport complex subunit RsxA -
  ACEL84_RS11950 (ACEL84_11950) rsxB 2615728..2616315 (+) 588 WP_261893086.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52354.97 Da        Isoelectric Point: 6.0435

>NTDB_id=1043108 ACEL84_RS11930 WP_261893081.1 2610334..2611743(-) (luxO) [Vibrio porteresiae strain MSSRF31]
MQLEYPTQKAKYLLMVEDTASVAALYRSYLLPLEIDIKVVGTGREAIESIAQREPDLILLDLRLPDMTGMDVLHAVKLKH
PDVPVVFMTAHGSIDTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNETDDPGNQNYQGFIGSSQTMQAVYRT
IDSAATSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAEAADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGDDVIEIAYSLLGFMSKEEGKGFVRLHAEVVERFKHYGWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNRPIEPRA
EVVTESNERGPVSVHDIFPLWLTEKQAIEKAIEACEGNIPKAAGYLDVSPSTIYRKLQSWNEKEKEKEK

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=1043108 ACEL84_RS11930 WP_261893081.1 2610334..2611743(-) (luxO) [Vibrio porteresiae strain MSSRF31]
ATGCAATTAGAATACCCAACTCAAAAAGCAAAATATCTGCTCATGGTTGAGGATACCGCGTCGGTGGCGGCGCTATACCG
TTCCTATCTATTGCCTTTGGAAATTGATATCAAGGTAGTTGGGACCGGACGAGAGGCCATCGAAAGTATTGCTCAACGAG
AGCCGGATCTGATTCTACTTGATCTGCGTTTACCAGATATGACTGGTATGGATGTATTGCACGCAGTGAAACTCAAGCAT
CCTGATGTCCCTGTCGTGTTCATGACAGCACACGGTTCGATTGATACTGCTGTGGAAGCAATGCGTCATGGTGCACAAGA
TTTCCTCATTAAACCCTGCGAAGCGGACCGCTTGCGTGTCACGGTCAATAATGCCATTCGCAAGGCAAGCAAATTAAAAA
ATGAAACTGATGACCCTGGTAACCAAAATTATCAAGGTTTTATCGGTAGTAGTCAGACTATGCAGGCGGTGTATCGCACG
ATTGACTCAGCAGCAACCAGTAAGGCGAGTATTTTTATCACTGGTGAAAGTGGTACGGGTAAAGAGGTATGTGCTGAAGC
TATTCATGCGGCGAGTAAACGTGGTGATAAACCGTTTATTGCGATTAACTGTGCTGCAATCCCGAAAGATTTGATCGAAA
GTGAGCTGTTTGGTCACGTGAAAGGGGCGTTTACTGGCGCAGCAACGGATCGCCAAGGGGCAGCCGAAGCCGCAGATGGT
GGCACGTTGTTCTTGGATGAATTGTGTGAAATGGATTTGGATCTACAAACCAAATTATTACGCTTTATCCAAACAGGTAC
CTTCCAAAAAGTAGGTTCGTCCAAAATGAAGAGCGTCGATGTCCGCTTTGTCTGTGCAACGAACCGTGATCCTTGGAAAG
AGGTACAGGAAGGTCGTTTTCGTGAGGACTTGTATTACCGTTTGTACGTCATCCCATTGCATTTGCCACCACTGCGCGAA
CGTGGTGATGATGTGATTGAAATCGCTTACTCACTGCTGGGCTTTATGTCAAAAGAAGAGGGTAAAGGTTTTGTTCGTCT
GCATGCTGAAGTGGTAGAGCGTTTTAAACACTATGGATGGCCAGGTAACGTACGCCAGTTGCAAAACGTGTTGCGTAACG
TCGTTGTGCTCAACGAAGGACGTGAAATTACCCTCAATATGTTACCACCGCCATTAAACCGCCCAATTGAACCTCGTGCT
GAGGTAGTGACCGAAAGCAATGAGCGTGGTCCGGTGTCAGTGCATGACATTTTCCCTTTGTGGTTAACTGAAAAACAAGC
CATCGAAAAAGCCATTGAAGCTTGTGAAGGCAATATTCCTAAAGCAGCTGGGTATTTGGATGTGAGCCCATCTACCATTT
ATCGTAAGTTGCAAAGTTGGAACGAAAAAGAAAAAGAGAAGGAAAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(420-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

89.262

95.309

0.851
  pilR Pseudomonas aeruginosa PAK

39.111

95.949

0.375

Multiple sequence alignment