Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABQU55_RS06290 Genome accession   NZ_CP168206
Coordinates   1480034..1481428 (-) Length   464 a.a.
NCBI ID   WP_053045681.1    Uniprot ID   -
Organism   Xanthomonas arboricola pv. juglandis strain WHRI 5692A     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1461533..1486620 1480034..1481428 within 0


Gene organization within MGE regions


Location: 1461533..1486620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQU55_RS06200 (ABQU55_006200) - 1461533..1461895 (-) 363 WP_016904888.1 hypothetical protein -
  ABQU55_RS06205 (ABQU55_006205) - 1462385..1463665 (-) 1281 WP_080591431.1 retropepsin-like aspartic protease -
  ABQU55_RS06210 (ABQU55_006210) - 1463737..1464297 (-) 561 WP_102596783.1 hypothetical protein -
  ABQU55_RS06215 (ABQU55_006215) - 1464841..1465047 (+) 207 WP_374057769.1 ImmA/IrrE family metallo-endopeptidase -
  ABQU55_RS06220 (ABQU55_006220) - 1465032..1465544 (+) 513 WP_049805061.1 ImmA/IrrE family metallo-endopeptidase -
  ABQU55_RS06225 (ABQU55_006225) - 1466119..1466505 (+) 387 WP_026064907.1 hypothetical protein -
  ABQU55_RS06230 (ABQU55_006230) - 1466594..1466986 (+) 393 WP_023904915.1 H-NS family nucleoid-associated regulatory protein -
  ABQU55_RS06235 (ABQU55_006235) glgX 1467658..1469790 (-) 2133 WP_349812720.1 glycogen debranching protein GlgX -
  ABQU55_RS06240 (ABQU55_006240) rimK 1470280..1471185 (+) 906 WP_166767257.1 30S ribosomal protein S6--L-glutamate ligase -
  ABQU55_RS06245 (ABQU55_006245) - 1471412..1471882 (+) 471 WP_039525800.1 hypothetical protein -
  ABQU55_RS06250 (ABQU55_006250) - 1471914..1472591 (+) 678 WP_006448355.1 response regulator transcription factor -
  ABQU55_RS06255 (ABQU55_006255) - 1472584..1473918 (+) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  ABQU55_RS06260 (ABQU55_006260) - 1474021..1474266 (-) 246 WP_374057770.1 SymE family type I addiction module toxin -
  ABQU55_RS06265 (ABQU55_006265) coaE 1474276..1474899 (-) 624 WP_039525803.1 dephospho-CoA kinase -
  ABQU55_RS06270 (ABQU55_006270) - 1474913..1475776 (-) 864 WP_016849610.1 A24 family peptidase -
  ABQU55_RS06275 (ABQU55_006275) pilC 1475783..1477042 (-) 1260 WP_039525808.1 type II secretion system F family protein Machinery gene
  ABQU55_RS06280 (ABQU55_006280) - 1477387..1477794 (+) 408 WP_039529754.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  ABQU55_RS06285 (ABQU55_006285) pilB 1478096..1479820 (+) 1725 WP_039525810.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ABQU55_RS06290 (ABQU55_006290) pilR 1480034..1481428 (-) 1395 WP_053045681.1 sigma-54 dependent transcriptional regulator Regulator
  ABQU55_RS06295 (ABQU55_006295) - 1481621..1483234 (-) 1614 WP_349812721.1 HAMP domain-containing sensor histidine kinase -
  ABQU55_RS06300 (ABQU55_006300) sucC 1483466..1484635 (+) 1170 WP_039519379.1 ADP-forming succinate--CoA ligase subunit beta -
  ABQU55_RS06305 (ABQU55_006305) sucD 1484660..1485535 (+) 876 WP_011038208.1 succinate--CoA ligase subunit alpha -
  ABQU55_RS06310 (ABQU55_006310) - 1485612..1486049 (-) 438 WP_180973917.1 hypothetical protein -
  ABQU55_RS06315 (ABQU55_006315) - 1486228..1486620 (+) 393 WP_026064065.1 endonuclease domain-containing protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50148.58 Da        Isoelectric Point: 6.5112

>NTDB_id=1043082 ABQU55_RS06290 WP_053045681.1 1480034..1481428(-) (pilR) [Xanthomonas arboricola pv. juglandis strain WHRI 5692A]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPLAPPPEQASRLLGDSAAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=1043082 ABQU55_RS06290 WP_053045681.1 1480034..1481428(-) (pilR) [Xanthomonas arboricola pv. juglandis strain WHRI 5692A]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCACGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATTGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCTTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGATATCAGCGTACTGCGCGGCCTGGTCAAGCACGCACTGGAATTGAACAACCGCGACCGCCCCGCCCCACTCGCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGCCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGAAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
ACGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGTGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCACATGCCGACAAGCCAGGCCTGTTCCAGGCCGCACATGGCGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAATCAGTGCGCCCGGTGGGCGC
GTCCAGCGAGTCGCTGGTGGACGTGCGCATCCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCACTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACCCCCGGCAGCGCCGCC
GTCGAGCCCCGCGAAGCAGTGGTCGACATCGACCCGGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.067

99.784

0.629
  pilR Acinetobacter baumannii strain A118

48.922

100

0.489

Multiple sequence alignment