Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   R8663_RS03085 Genome accession   NZ_AP028331
Coordinates   596637..597410 (+) Length   257 a.a.
NCBI ID   WP_002868431.1    Uniprot ID   A0AAW5E9C5
Organism   Campylobacter jejuni strain BCH-10091     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 591637..602410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8663_RS03070 (B10091_06030) - 592486..594420 (-) 1935 WP_002852122.1 RNB domain-containing ribonuclease -
  R8663_RS03075 (B10091_06040) ilvC 594539..595561 (+) 1023 WP_002858483.1 ketol-acid reductoisomerase -
  R8663_RS03080 (B10091_06050) - 595565..596647 (+) 1083 WP_002859983.1 divergent polysaccharide deacetylase family protein -
  R8663_RS03085 (B10091_06060) dprA 596637..597410 (+) 774 WP_002868431.1 DNA-processing protein DprA Machinery gene
  R8663_RS03090 (B10091_06070) ruvX 597407..597790 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX -
  R8663_RS03095 (B10091_06080) - 597819..598658 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  R8663_RS03100 (B10091_06090) msrA 598834..599331 (-) 498 WP_002852283.1 peptide-methionine (S)-S-oxide reductase MsrA -
  R8663_RS03105 (B10091_06100) ppa 599373..599891 (-) 519 WP_002867724.1 inorganic diphosphatase -
  R8663_RS03110 (B10091_06110) adk 599901..600479 (-) 579 WP_002859580.1 adenylate kinase -
  R8663_RS03115 (B10091_06120) aspS 600476..602227 (-) 1752 WP_032581037.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28848.66 Da        Isoelectric Point: 7.0853

>NTDB_id=104301 R8663_RS03085 WP_002868431.1 596637..597410(+) (dprA) [Campylobacter jejuni strain BCH-10091]
MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSRRMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITA
SMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
AKLALELNKPLYVLPQRLEESTGTNFLLKENKAKLICDFKEFVSEFASIDINQDEFLEFCKKGVSVDEALKIYGQKVYEY
ELEGKISIEGLFIRVLA

Nucleotide


Download         Length: 774 bp        

>NTDB_id=104301 R8663_RS03085 WP_002868431.1 596637..597410(+) (dprA) [Campylobacter jejuni strain BCH-10091]
ATGGCAAGTGAAATTTTGCCTGATGAATTTTTAGAACTTTTTAAAGATTTAAAAAAGCCTCCTAAAAAATTACACTATAA
AGGAAATTTATCTTTATTAAAACAAGATAAAATCGCTATTATAGGTTCAAGGCGTATGAGTGTTTATACGAAAAATTGTG
TTTTTTCCTTAGCGAGTATGCTTAAAAATGCTCATCTTTGCGTGGTAAGTGGCGGTGCTTTGGGTGTGGATATCACCGCA
AGTATGGCAGCTATGCCAAATACTATAGGTATTTTTGCTAATGGTTTAGATCAAATTTATCCAAGAACTAATGAAAAAAT
CATTAAACAAATTTATGAAAATGCTTTAGCTTTAAGTGAATACGAAGATGATTATTTGCCAAAAAATTATGATTTTTTAC
TAAGAAATCGTTTGGTTATTGCTTTAAGTAAGGCCGTTGTGGTTGCACAAGCAGATATAAAAAGTGGTTCTATGCAGAGT
GCAAAACTTGCTTTAGAACTCAATAAACCTTTATATGTTTTACCACAAAGACTAGAAGAAAGCACAGGAACTAATTTTCT
TTTAAAGGAAAATAAAGCAAAGTTAATTTGTGATTTTAAAGAATTTGTAAGTGAGTTTGCAAGTATAGATATAAATCAAG
ATGAATTTTTAGAGTTTTGTAAAAAAGGTGTGAGTGTTGATGAGGCTTTAAAAATTTATGGACAAAAAGTTTATGAATAT
GAACTTGAGGGAAAAATTTCCATAGAAGGGCTTTTTATAAGGGTTTTAGCATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(9-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

98.444

100

0.984
  dprA Helicobacter pylori 26695

49.167

93.385

0.459

Multiple sequence alignment