Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABQ054_RS07930 Genome accession   NZ_CP168190
Coordinates   1870259..1870780 (+) Length   173 a.a.
NCBI ID   WP_104551990.1    Uniprot ID   -
Organism   Xanthomonas hortorum pv. hederae strain WHRI 7714     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1865259..1875780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABQ054_RS07910 (ABQ054_007910) - 1865584..1866042 (+) 459 WP_104551994.1 hypothetical protein -
  ABQ054_RS07915 (ABQ054_007915) murL 1866039..1867394 (+) 1356 WP_104551993.1 UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-L- glutamate epimerase -
  ABQ054_RS07920 (ABQ054_007920) murD 1867375..1868784 (+) 1410 WP_104551992.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase -
  ABQ054_RS07925 (ABQ054_007925) - 1868987..1869985 (-) 999 WP_104551991.1 polyprenyl synthetase family protein -
  ABQ054_RS07930 (ABQ054_007930) ssb 1870259..1870780 (+) 522 WP_104551990.1 single-stranded DNA-binding protein Machinery gene
  ABQ054_RS07935 (ABQ054_007935) - 1870853..1871422 (-) 570 WP_273664290.1 AAA family ATPase -
  ABQ054_RS07940 (ABQ054_007940) - 1871430..1872086 (-) 657 WP_104551988.1 2OG-Fe(II) oxygenase -
  ABQ054_RS07945 (ABQ054_007945) - 1872123..1873331 (-) 1209 WP_104551987.1 aspartate aminotransferase family protein -
  ABQ054_RS07950 (ABQ054_007950) - 1873363..1874427 (-) 1065 WP_219820143.1 sulfotransferase -
  ABQ054_RS07955 (ABQ054_007955) - 1874424..1875278 (-) 855 WP_104551985.1 TauD/TfdA family dioxygenase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18600.45 Da        Isoelectric Point: 5.3177

>NTDB_id=1042971 ABQ054_RS07930 WP_104551990.1 1870259..1870780(+) (ssb) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
MARGINKVILVGNLGNDPDTKYTQAGMAITRVSLATTSMRKDREGNNQERTEWHRVVFFGKLGEIAGEYLRKGSQVYVEG
ELRYDKYTGQDGVEKYSTDIVANEMQMLGGRGEGGGGGGMGGDRPQRAQAPRQQQGGGGGGGQGGGQDSRRQQPAQQQSA
PPMDDFADDDIPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=1042971 ABQ054_RS07930 WP_104551990.1 1870259..1870780(+) (ssb) [Xanthomonas hortorum pv. hederae strain WHRI 7714]
ATGGCCCGCGGCATCAACAAAGTCATCCTCGTCGGCAACCTCGGCAACGATCCCGACACCAAGTACACCCAGGCCGGCAT
GGCGATCACCCGCGTGAGCCTGGCCACGACCAGCATGCGCAAGGACCGCGAAGGCAACAACCAGGAGCGCACCGAGTGGC
ACCGCGTGGTGTTCTTCGGAAAGCTGGGCGAAATCGCCGGTGAGTACCTGCGCAAGGGCTCGCAGGTGTACGTCGAAGGC
GAGTTGCGCTACGACAAGTACACCGGCCAGGACGGCGTGGAAAAGTACAGCACCGACATCGTCGCCAACGAAATGCAGAT
GCTCGGCGGCCGTGGTGAAGGCGGCGGTGGTGGCGGCATGGGCGGCGATCGCCCGCAGCGCGCGCAGGCTCCGCGCCAGC
AGCAGGGTGGCGGCGGTGGTGGCGGTCAGGGCGGCGGTCAGGATTCGCGTCGCCAGCAGCCGGCCCAGCAGCAGTCCGCG
CCGCCGATGGACGACTTTGCGGATGACGACATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

46.995

100

0.497
  ssb Glaesserella parasuis strain SC1401

46.409

100

0.486
  ssb Neisseria meningitidis MC58

46.067

100

0.474
  ssb Neisseria gonorrhoeae MS11

44.318

100

0.451

Multiple sequence alignment