Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   QOR56_RS01930 Genome accession   NZ_OX460906
Coordinates   343436..344077 (+) Length   213 a.a.
NCBI ID   WP_000357891.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 338436..349077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS01910 - 338873..339610 (+) 738 WP_283572065.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  QOR56_RS01915 pknB 339610..341565 (+) 1956 WP_283573722.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  QOR56_RS01920 liaF 341726..342427 (+) 702 WP_283572067.1 cell wall-active antibiotics response protein LiaF -
  QOR56_RS01925 - 342424..343443 (+) 1020 WP_283572068.1 sensor histidine kinase -
  QOR56_RS01930 vraR 343436..344077 (+) 642 WP_000357891.1 response regulator transcription factor Regulator
  QOR56_RS01935 - 344119..345519 (+) 1401 WP_000339135.1 Cof-type HAD-IIB family hydrolase -
  QOR56_RS01940 - 345521..345877 (+) 357 WP_000689608.1 S1 RNA-binding domain-containing protein -
  QOR56_RS01945 - 345923..346699 (-) 777 WP_000180536.1 glycyl-radical enzyme activating protein -
  QOR56_RS01950 - 346820..347575 (+) 756 WP_001080743.1 DeoR/GlpR family DNA-binding transcription regulator -
  QOR56_RS01955 - 347694..348677 (+) 984 WP_283572287.1 sugar-binding transcriptional regulator -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23634.35 Da        Isoelectric Point: 5.0159

>NTDB_id=1042901 QOR56_RS01930 WP_000357891.1 343436..344077(+) (vraR) [Streptococcus agalactiae isolate MRI Z2-265]
MDKIKIVLVDDHEMVRLGLKSFLNLQADVEVIGEASNGLEGIKKALELRPDVVVMDLVMPEMDGVEATLALLKDWPEAAI
LVLTSYLDNEKIYPVIEAGAKGYMLKTSSAAEILNAIRKVARGEQAIENEVDKKIKAHDKCPALHEGLTARERDILNLLA
KGYDNQRIADELFISLKTVKTHVSNILGKLNVADRTQAVVYAFQHHLVPQDDE

Nucleotide


Download         Length: 642 bp        

>NTDB_id=1042901 QOR56_RS01930 WP_000357891.1 343436..344077(+) (vraR) [Streptococcus agalactiae isolate MRI Z2-265]
ATGGATAAAATAAAAATTGTACTTGTTGATGACCATGAGATGGTTCGTCTCGGTTTAAAAAGTTTTTTAAACTTACAAGC
TGATGTTGAAGTAATAGGTGAAGCCTCAAATGGTTTAGAAGGCATAAAAAAAGCACTGGAGTTACGTCCAGACGTTGTTG
TTATGGACTTAGTAATGCCTGAAATGGACGGTGTAGAAGCAACCTTAGCATTATTGAAGGATTGGCCAGAAGCTGCCATT
TTAGTCTTAACATCTTACTTGGATAATGAAAAAATTTACCCTGTTATTGAAGCAGGTGCCAAAGGCTATATGTTAAAGAC
CTCAAGCGCAGCAGAGATTCTTAATGCCATTCGTAAAGTTGCAAGGGGAGAACAAGCTATTGAAAATGAAGTAGATAAGA
AAATTAAGGCTCATGATAAATGTCCAGCTTTACATGAGGGCTTAACAGCAAGGGAACGTGATATTCTTAATTTATTAGCC
AAAGGTTATGACAATCAAAGGATTGCTGATGAATTATTTATCTCGTTAAAGACTGTTAAAACTCATGTTTCTAATATTTT
GGGAAAACTAAATGTGGCAGATCGAACTCAAGCAGTTGTCTATGCTTTCCAACACCATTTGGTACCACAAGATGATGAAT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

54.369

96.714

0.526
  degU Bacillus subtilis subsp. subtilis str. 168

37.168

100

0.394

Multiple sequence alignment