Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   QOR56_RS01170 Genome accession   NZ_OX460906
Coordinates   200768..201139 (+) Length   123 a.a.
NCBI ID   WP_000601101.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-265     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 195768..206139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR56_RS01145 - 196329..196694 (+) 366 WP_000285374.1 DUF1033 family protein -
  QOR56_RS01150 - 196924..198384 (+) 1461 WP_000468685.1 IS1182-like element IS1563 family transposase -
  QOR56_RS01155 comGA 198430..199401 (+) 972 WP_000250798.1 competence type IV pilus ATPase ComGA Machinery gene
  QOR56_RS01160 comGB 199295..200338 (+) 1044 WP_223297804.1 competence type IV pilus assembly protein ComGB Machinery gene
  QOR56_RS01165 comGF 200335..200790 (+) 456 WP_000793378.1 competence type IV pilus minor pilin ComGF Machinery gene
  QOR56_RS01170 comGG 200768..201139 (+) 372 WP_000601101.1 competence type IV pilus minor pilin ComGG Machinery gene
  QOR56_RS01175 comGH 201254..202228 (+) 975 WP_001008569.1 class I SAM-dependent methyltransferase Machinery gene
  QOR56_RS01180 - 202260..203453 (+) 1194 WP_000047534.1 acetate kinase -
  QOR56_RS01185 - 203581..203773 (+) 193 Protein_180 helix-turn-helix transcriptional regulator -
  QOR56_RS01190 - 203752..204018 (+) 267 Protein_181 hypothetical protein -
  QOR56_RS01195 - 204114..205289 (+) 1176 WP_000191687.1 IS256-like element ISSag11 family transposase -
  QOR56_RS01200 - 205407..206072 (+) 666 WP_000008108.1 type II CAAX endopeptidase family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13891.14 Da        Isoelectric Point: 10.0693

>NTDB_id=1042891 QOR56_RS01170 WP_000601101.1 200768..201139(+) (comGG) [Streptococcus agalactiae isolate MRI Z2-265]
MILKKKLKAGILLQAIVLAAVFTLVLQFYLARILATERQYHSQIEASKAYLTAQLAYKTIEGDSISGKCYFIGGYASYLQ
EGNYLQVKVTLDKGGNYNHKFYRKTDTLQVPLKSNDNKASHKH

Nucleotide


Download         Length: 372 bp        

>NTDB_id=1042891 QOR56_RS01170 WP_000601101.1 200768..201139(+) (comGG) [Streptococcus agalactiae isolate MRI Z2-265]
ATGATTTTAAAGAAGAAACTTAAAGCTGGCATCCTTTTGCAAGCTATTGTATTGGCTGCTGTATTTACACTCGTCTTACA
GTTTTATCTAGCAAGAATATTGGCAACAGAAAGACAGTATCATAGCCAAATTGAAGCAAGTAAAGCTTATTTAACAGCGC
AGTTAGCTTATAAAACAATAGAAGGTGACTCCATATCAGGAAAATGTTATTTTATAGGAGGATATGCTTCATACCTCCAA
GAAGGGAACTATTTACAAGTTAAGGTTACATTGGATAAGGGAGGAAACTATAACCATAAGTTTTATCGTAAAACAGACAC
TCTCCAAGTACCTCTCAAGTCTAATGATAATAAAGCAAGCCATAAACATTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

44.554

82.114

0.366
  comGG Streptococcus mutans UA159

44.554

82.114

0.366