Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ACCK26_RS02565 Genome accession   NZ_CP168160
Coordinates   547625..548194 (+) Length   189 a.a.
NCBI ID   WP_234771143.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CUBIST-33     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 542625..553194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCK26_RS02540 (ACCK26_02540) cysE 543838..544485 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  ACCK26_RS02545 (ACCK26_02545) cysS 544469..545869 (+) 1401 WP_000631969.1 cysteine--tRNA ligase -
  ACCK26_RS02550 (ACCK26_02550) - 545862..546266 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ACCK26_RS02555 (ACCK26_02555) rlmB 546274..547020 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACCK26_RS02560 (ACCK26_02560) - 547020..547544 (+) 525 WP_000664737.1 NYN domain-containing protein -
  ACCK26_RS02565 (ACCK26_02565) sigH 547625..548194 (+) 570 WP_234771143.1 sigma-70 family RNA polymerase sigma factor Regulator
  ACCK26_RS02570 (ACCK26_02570) rpmG 548309..548452 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ACCK26_RS02575 (ACCK26_02575) secE 548508..548690 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ACCK26_RS02580 (ACCK26_02580) nusG 548703..549251 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ACCK26_RS02585 (ACCK26_02585) rplK 549432..549854 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ACCK26_RS02590 (ACCK26_02590) rplA 550062..550754 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ACCK26_RS02595 (ACCK26_02595) rplJ 551026..551526 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ACCK26_RS02600 (ACCK26_02600) rplL 551569..551937 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ACCK26_RS02605 (ACCK26_02605) - 552112..552720 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22984.87 Da        Isoelectric Point: 9.3231

>NTDB_id=1042816 ACCK26_RS02565 WP_234771143.1 547625..548194(+) (sigH) [Staphylococcus aureus strain CUBIST-33]
MKYDLTTQDSTIKRNNSINDKDFEKLVMDLQPLIIRRIKTFGFNHCDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRFDVENNYLNKLAIKELICQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1042816 ACCK26_RS02565 WP_234771143.1 547625..548194(+) (sigH) [Staphylococcus aureus strain CUBIST-33]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATTCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTGTGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTTTGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTTGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAATTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

99.471

100

0.995
  sigH Staphylococcus aureus MW2

97.354

100

0.974

Multiple sequence alignment