Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   R8565_RS02920 Genome accession   NZ_AP028330
Coordinates   549109..549759 (-) Length   216 a.a.
NCBI ID   WP_209392645.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10089     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 544109..554759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8565_RS02885 (B10089_05610) - 544487..545491 (+) 1005 WP_002852264.1 membrane protein -
  R8565_RS02890 (B10089_05620) tlyA 545488..546249 (+) 762 WP_209392641.1 TlyA family RNA methyltransferase -
  R8565_RS02895 (B10089_05630) ribF 546215..547069 (+) 855 WP_209392642.1 bifunctional riboflavin kinase/FAD synthetase -
  R8565_RS02900 (B10089_05640) cmoA 547056..547766 (+) 711 WP_209392643.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  R8565_RS02905 (B10089_05650) - 547783..547977 (-) 195 WP_079263876.1 EexN family lipoprotein -
  R8565_RS02910 (B10089_05660) - 547968..548408 (-) 441 WP_209392644.1 EexN family lipoprotein -
  R8565_RS02915 (B10089_05670) - 548466..549098 (-) 633 WP_011990256.1 trimeric intracellular cation channel family protein -
  R8565_RS02920 (B10089_05680) CJE0566 549109..549759 (-) 651 WP_209392645.1 DNA/RNA non-specific endonuclease Regulator
  R8565_RS02925 (B10089_05690) nth 549756..550382 (-) 627 WP_002857170.1 endonuclease III -
  R8565_RS02930 (B10089_05700) peb4 550463..551284 (+) 822 WP_052801309.1 peptidylprolyl isomerase PEB4 -
  R8565_RS02935 (B10089_05710) fbaA 551284..552348 (+) 1065 WP_002880322.1 class II fructose-bisphosphate aldolase -
  R8565_RS02940 (B10089_05720) - 552443..553885 (+) 1443 WP_002854979.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25401.11 Da        Isoelectric Point: 9.7430

>NTDB_id=104273 R8565_RS02920 WP_209392645.1 549109..549759(-) (CJE0566) [Campylobacter jejuni strain BCH-10089]
MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFED
DTNIPKKYRTTWSDYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNTIWNEIEQRERSLALKFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYIKIIKTPKFKECYQVPNHEVNDENIKQYQINCNKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=104273 R8565_RS02920 WP_209392645.1 549109..549759(-) (CJE0566) [Campylobacter jejuni strain BCH-10089]
ATGAAAATTTTCATCTTTTTACTCGCTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAACCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCCGTTGCTTATAAAGTAGAAGCTTCAAATTTAAAAGATAAACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTGATTATAAAAACAGTGGTTACACACGAGGACACACTGCGCC
TAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATACAATTTGGAATGAAATCGAACAAAGAGAAAGAAGTTTAGCTTTAAAATTTCAAAGTATTGAGGTTTTAAAT
TTAGTACTTTATGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATATAAAAATTATTAAAAC
TCCAAAATTTAAAGAATGCTATCAAGTACCAAACCATGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTA
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

71.066

91.204

0.648
  CJE1441 Campylobacter jejuni RM1221

70.051

91.204

0.639

Multiple sequence alignment