Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   O0236_RS08085 Genome accession   NZ_CP168151
Coordinates   1532928..1534739 (-) Length   603 a.a.
NCBI ID   WP_268913748.1    Uniprot ID   -
Organism   Lentilactobacillus terminaliae strain SPB1-3     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1527928..1539739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O0236_RS08060 (O0236_008060) - 1529084..1529596 (-) 513 WP_268913757.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  O0236_RS08065 (O0236_008065) - 1529712..1530605 (-) 894 WP_268913756.1 RluA family pseudouridine synthase -
  O0236_RS08070 (O0236_008070) - 1530598..1531410 (-) 813 WP_268913754.1 NAD kinase -
  O0236_RS08075 (O0236_008075) - 1531391..1532041 (-) 651 WP_329608928.1 GTP pyrophosphokinase family protein -
  O0236_RS08080 (O0236_008080) - 1532240..1532872 (+) 633 WP_268913750.1 DsbA family protein -
  O0236_RS08085 (O0236_008085) pepF 1532928..1534739 (-) 1812 WP_268913748.1 oligoendopeptidase F Regulator
  O0236_RS08090 (O0236_008090) - 1534784..1535884 (-) 1101 WP_268913747.1 competence protein CoiA -
  O0236_RS08095 (O0236_008095) - 1535969..1537462 (+) 1494 WP_268913745.1 gamma-glutamylcysteine synthetase -
  O0236_RS08100 (O0236_008100) - 1537519..1538181 (-) 663 WP_268913743.1 adaptor protein MecA -
  O0236_RS08105 (O0236_008105) spx 1538298..1538696 (-) 399 WP_268913742.1 transcriptional regulator Spx -
  O0236_RS08110 (O0236_008110) - 1538808..1539548 (-) 741 WP_268913740.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69190.02 Da        Isoelectric Point: 4.5638

>NTDB_id=1042676 O0236_RS08085 WP_268913748.1 1532928..1534739(-) (pepF) [Lentilactobacillus terminaliae strain SPB1-3]
MAEVTELPLRKDVDPELTWDLTTIYHDDSEFQTDFENVKKQIDSYSKLTGTLANDAQSLLKATTAILAGARLLDKVYVYA
QLKNDQDTSVDKYQSMLAQVSDLASQFSAATAWFDPELLRLDSQKMDQYYEAEPKLKDYRRFFNQTFSLRDHILSDDVEH
ALALSSDVFDSGEKTFGILNNTDLSFPTVTDEEGNKVKLSDGVYGVLLESADPSVRRQAFKKLYEVYSQFQHTLSATLTT
NVKQHNLKANLKHYDNALQAALTVNEIPTNVYQNLIDVVNEHLPLLHRYVQLRKQILGVDELHMYDMYTSLVGEQSPRYT
FDESKRIARDALQVLGDDYVSHVDEEFNQRWIDVVENRYKRSGGYSSGTYDTNPFILLNWQDNLDNLYTLIHETGHSMHS
YYAKNNQPFQYGDYSIFVAEIASTTNENLLTDQLLADPNIDSNLKKHILNYYLDGFKGTVFRQTQFAEFEQFIHEQDAAG
QPLTASFLNENYLKLNQKYYGDAVISDDEIGLEWSRIPHFYYNFYVYQYATGFAAASTLADKVVNGDQRDVDAYLGFLKS
GSSDIPTNVMKKAGVDMTKPEYLEKAFAIFEERLNEFEKLVTK

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=1042676 O0236_RS08085 WP_268913748.1 1532928..1534739(-) (pepF) [Lentilactobacillus terminaliae strain SPB1-3]
ATGGCAGAAGTAACAGAGTTACCACTGAGAAAAGATGTCGATCCAGAATTAACATGGGATTTAACTACGATCTATCATGA
TGATTCTGAATTCCAAACGGATTTTGAAAACGTTAAAAAACAAATTGATAGTTATTCTAAATTAACTGGCACATTAGCAA
ATGATGCTCAAAGCCTTTTGAAAGCAACAACAGCAATTTTGGCTGGTGCTAGATTGTTAGACAAAGTTTATGTATATGCT
CAATTAAAAAATGATCAGGATACAAGCGTAGACAAGTATCAGTCGATGCTTGCCCAGGTATCTGACTTAGCATCACAATT
TTCTGCGGCCACTGCTTGGTTTGACCCTGAATTACTTCGTTTAGACAGTCAAAAGATGGATCAATACTACGAAGCTGAAC
CAAAGCTAAAAGATTATCGTCGCTTTTTCAACCAGACATTTAGCCTTAGAGACCATATTCTAAGTGATGATGTTGAACAT
GCACTTGCATTGTCTAGTGATGTGTTTGATTCAGGAGAAAAGACATTTGGGATTTTAAATAATACCGACCTTTCATTTCC
AACTGTAACTGATGAGGAAGGAAACAAGGTCAAACTGTCTGATGGTGTATATGGTGTTTTGCTAGAATCGGCTGATCCTT
CAGTTCGCCGACAGGCATTTAAAAAATTATATGAAGTTTATAGCCAATTTCAACATACATTAAGTGCAACTTTAACTACT
AATGTTAAACAACATAATTTAAAGGCCAACTTGAAACATTACGATAATGCCCTTCAGGCAGCGTTAACTGTGAATGAAAT
TCCAACTAATGTTTACCAGAACTTGATTGATGTGGTAAATGAGCATTTGCCATTACTCCATCGATACGTTCAGTTGCGTA
AGCAGATTTTAGGTGTAGATGAGTTGCATATGTATGATATGTATACATCCTTGGTTGGAGAACAGTCTCCTCGGTACACA
TTTGATGAATCCAAACGAATTGCACGTGATGCACTTCAAGTTTTAGGCGACGACTATGTTAGTCACGTTGATGAAGAATT
CAACCAACGATGGATCGATGTGGTGGAAAATCGCTATAAACGAAGTGGGGGATATTCCTCAGGCACATATGATACTAACC
CGTTTATTTTGTTGAATTGGCAAGATAATTTGGATAACTTGTATACACTGATTCACGAAACCGGTCATAGTATGCACAGC
TACTATGCTAAAAATAATCAACCATTCCAATATGGTGATTACTCGATTTTTGTTGCAGAAATTGCTTCAACTACAAATGA
AAACTTGCTGACAGACCAATTACTTGCTGACCCAAACATTGATAGTAATCTAAAGAAACACATTTTAAATTATTATCTTG
ATGGATTTAAAGGAACAGTTTTCCGTCAGACACAGTTTGCTGAATTTGAACAGTTTATTCATGAACAGGATGCTGCTGGT
CAACCATTGACCGCTAGCTTCTTGAATGAAAATTATTTGAAGTTGAACCAAAAGTATTATGGGGATGCGGTAATCTCTGA
TGATGAAATTGGATTAGAATGGTCACGGATTCCACATTTTTACTACAATTTTTATGTTTACCAATATGCTACTGGATTTG
CAGCTGCCTCAACACTTGCTGATAAGGTGGTTAACGGTGATCAGAGAGATGTTGATGCGTACCTTGGATTTTTAAAGTCT
GGAAGCTCTGATATTCCCACTAACGTAATGAAGAAGGCAGGGGTAGACATGACTAAGCCAGAGTATTTGGAAAAGGCATT
TGCAATCTTTGAAGAAAGATTGAATGAGTTTGAAAAATTAGTTACTAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.515

98.507

0.507

Multiple sequence alignment