Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AB9L17_RS24995 Genome accession   NZ_CP168124
Coordinates   4839662..4840231 (-) Length   189 a.a.
NCBI ID   WP_068985805.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4834662..4845231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS24965 (AB9L17_24970) - 4835375..4836088 (+) 714 WP_068985801.1 response regulator transcription factor -
  AB9L17_RS24970 (AB9L17_24975) - 4836085..4837143 (+) 1059 WP_068985802.1 cell wall metabolism sensor histidine kinase WalK -
  AB9L17_RS24975 (AB9L17_24980) - 4837291..4838571 (+) 1281 WP_223553699.1 hypothetical protein -
  AB9L17_RS24980 (AB9L17_24985) - 4838680..4838982 (-) 303 WP_068985803.1 site-specific integrase -
  AB9L17_RS24985 (AB9L17_24990) - 4839040..4839219 (-) 180 WP_068985804.1 hypothetical protein -
  AB9L17_RS24990 (AB9L17_24995) rpsR 4839387..4839623 (-) 237 WP_012296211.1 30S ribosomal protein S18 -
  AB9L17_RS24995 (AB9L17_25000) ssbA 4839662..4840231 (-) 570 WP_068985805.1 single-stranded DNA-binding protein Machinery gene
  AB9L17_RS25000 (AB9L17_25005) rpsF 4840276..4840563 (-) 288 WP_068985806.1 30S ribosomal protein S6 -
  AB9L17_RS25005 (AB9L17_25010) - 4840737..4841300 (+) 564 WP_068985807.1 DUF3267 domain-containing protein -
  AB9L17_RS25010 (AB9L17_25015) - 4841377..4842417 (-) 1041 WP_375199910.1 acyl-CoA dehydrogenase -
  AB9L17_RS25015 (AB9L17_25020) ychF 4842506..4843606 (-) 1101 WP_068985809.1 redox-regulated ATPase YchF -
  AB9L17_RS25020 (AB9L17_25025) - 4844090..4844290 (-) 201 WP_068985810.1 DUF951 domain-containing protein -
  AB9L17_RS25025 (AB9L17_25030) - 4844292..4845176 (-) 885 WP_068985811.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 20548.53 Da        Isoelectric Point: 4.7621

>NTDB_id=1042436 AB9L17_RS24995 WP_068985805.1 4839662..4840231(-) (ssbA) [Bacillus sp. RS11]
MINRVVLVGRLTKDPELRYTPNGVASTRFTVAVNRTFSNQQGDREADFISCVAWRKQAENLANFMRKGSLIGVEGRIQTG
SYEGQDGKRVYTTDVVADSVQFLEPRNGGGAPASPQYGGQTYGNNQPSYGGGQPQQQFGGAMPGQGSFGGDAYQQNQPPM
NQPNYTRVDEDPFANSKGPIEVSEDDLPF

Nucleotide


Download         Length: 570 bp        

>NTDB_id=1042436 AB9L17_RS24995 WP_068985805.1 4839662..4840231(-) (ssbA) [Bacillus sp. RS11]
ATGATAAACCGTGTTGTATTAGTTGGAAGACTAACAAAAGATCCTGAGCTGCGCTATACGCCGAATGGTGTTGCGTCTAC
AAGATTTACAGTTGCTGTGAATCGAACATTCTCAAACCAACAAGGCGATCGCGAAGCTGATTTCATTAGCTGTGTTGCTT
GGCGCAAACAGGCTGAAAACCTTGCGAACTTCATGCGAAAAGGAAGTTTAATTGGAGTGGAAGGCCGCATTCAAACAGGC
AGTTATGAAGGACAAGATGGTAAGCGAGTATACACAACAGATGTAGTGGCAGATAGCGTACAGTTTTTAGAACCTCGTAA
TGGTGGCGGTGCTCCTGCATCACCTCAATACGGTGGACAGACTTACGGTAATAACCAACCGTCATATGGCGGTGGTCAAC
CACAACAACAATTTGGTGGTGCTATGCCAGGGCAGGGTTCATTTGGCGGCGATGCTTATCAGCAAAATCAACCACCTATG
AATCAGCCGAATTATACACGTGTAGATGAGGATCCATTTGCTAATAGCAAAGGACCGATAGAAGTATCCGAGGATGATTT
ACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.026

100

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

48.205

100

0.497

Multiple sequence alignment