Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB9L17_RS24475 Genome accession   NZ_CP168124
Coordinates   4736942..4738318 (-) Length   458 a.a.
NCBI ID   WP_068985711.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4731942..4743318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS24455 (AB9L17_24460) gltX 4732412..4733872 (-) 1461 WP_068986562.1 glutamate--tRNA ligase -
  AB9L17_RS24460 (AB9L17_24465) ispF 4733964..4734440 (-) 477 WP_068986563.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AB9L17_RS24465 (AB9L17_24470) ispD 4734799..4735491 (-) 693 WP_068985830.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AB9L17_RS24470 (AB9L17_24475) - 4735504..4736589 (-) 1086 WP_068985710.1 PIN/TRAM domain-containing protein -
  AB9L17_RS24475 (AB9L17_24480) radA 4736942..4738318 (-) 1377 WP_068985711.1 DNA repair protein RadA Machinery gene
  AB9L17_RS24480 (AB9L17_24485) clpC 4738595..4741039 (-) 2445 WP_068985712.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB9L17_RS24485 (AB9L17_24490) - 4741029..4742138 (-) 1110 WP_068985713.1 protein arginine kinase -
  AB9L17_RS24490 (AB9L17_24495) - 4742135..4742683 (-) 549 WP_068985714.1 UvrB/UvrC motif-containing protein -
  AB9L17_RS24495 (AB9L17_24500) - 4742697..4743167 (-) 471 WP_068985715.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50072.86 Da        Isoelectric Point: 7.3823

>NTDB_id=1042432 AB9L17_RS24475 WP_068985711.1 4736942..4738318(-) (radA) [Bacillus sp. RS11]
MAKKKTKFVCSGCGYESAKWMGRCPGCGEWNKMVEEIEVVAKGPRGAFQHSATVTQKALPIMQVEAAEESRVATEMSELN
RVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSALLSNKGHRVLYISGEESIRQTKLRAERLGVISQELYIYSETNLEFLNQ
TIDDVQPKFVIVDSIQTVFHPEVTSAPGSVSQVRECTAELMRIAKTKGIAIFLVGHVTKEGQIAGPRILEHMVDTVLYFE
GERHHNHRILRSQKNRFGSTNEIAIFEMLQGGLKEVLNPSELFLQERSQGAAGSTIVASMEGTRPILVEIQSLVTPTSFN
YPKRMATGVDQNRVQLLMAVLEKRMGLMLQAQDAYIKVAGGVKLDEPAIDLAVLTSIVSSFKDQAVGATDCFIGEVGLTG
EVRRVSRIEQRVIEAAKLGFKRAFIPASNIGGWDFPQGIQIVGVETIKDALNTCFREL

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1042432 AB9L17_RS24475 WP_068985711.1 4736942..4738318(-) (radA) [Bacillus sp. RS11]
TTGGCAAAGAAAAAAACAAAATTTGTATGCTCAGGCTGTGGCTATGAATCGGCAAAATGGATGGGAAGATGCCCAGGGTG
TGGGGAATGGAATAAGATGGTTGAAGAGATAGAGGTTGTAGCTAAAGGGCCTCGAGGGGCTTTTCAACACTCCGCTACAG
TTACCCAAAAGGCTCTCCCTATTATGCAGGTTGAAGCAGCTGAGGAATCACGAGTTGCAACAGAAATGAGTGAGCTCAAC
CGAGTGCTAGGTGGAGGCATCGTACCTGGTTCGCTTGTATTAATCGGGGGAGACCCTGGGATTGGGAAGTCGACGTTATT
ATTACAAGTATCGGCATTACTTTCGAATAAAGGACATCGTGTGCTCTATATTTCCGGTGAGGAATCAATTCGTCAAACAA
AGCTACGGGCAGAGCGTTTAGGAGTGATATCACAGGAGCTCTATATATATTCAGAAACAAATTTAGAGTTTTTAAATCAG
ACCATCGATGATGTGCAGCCTAAGTTTGTCATTGTCGATTCCATTCAAACAGTTTTTCATCCTGAGGTAACGAGTGCACC
TGGTAGTGTATCACAGGTGCGTGAATGTACAGCGGAGCTAATGCGAATTGCAAAAACAAAGGGAATCGCTATTTTTTTAG
TTGGACATGTTACGAAAGAGGGACAAATTGCAGGACCGCGTATTTTGGAGCATATGGTTGATACGGTATTGTATTTTGAA
GGGGAACGACATCATAACCACCGTATTTTACGTAGCCAAAAAAACCGCTTTGGCTCTACTAATGAAATTGCTATTTTTGA
AATGCTTCAAGGAGGCTTAAAGGAAGTTTTAAATCCGTCTGAGTTGTTCTTGCAGGAACGTTCACAAGGGGCGGCAGGTT
CAACAATTGTTGCCTCGATGGAAGGTACACGACCAATTCTAGTTGAAATTCAGTCGCTTGTAACACCAACGAGTTTTAAT
TATCCGAAACGAATGGCAACGGGTGTAGATCAAAACCGTGTGCAACTGCTTATGGCAGTCCTTGAAAAGAGAATGGGTCT
CATGCTACAGGCGCAGGATGCATATATTAAAGTTGCTGGCGGTGTAAAGCTTGATGAGCCTGCAATTGATTTGGCGGTGT
TGACAAGCATTGTTTCAAGCTTTAAGGATCAAGCTGTCGGAGCGACCGATTGCTTTATTGGGGAGGTAGGATTGACGGGA
GAGGTGCGTCGAGTATCTCGTATTGAACAGCGTGTCATTGAGGCAGCGAAGCTCGGATTTAAACGAGCCTTCATCCCGGC
CTCGAATATCGGTGGCTGGGATTTTCCGCAAGGTATTCAGATAGTTGGTGTAGAAACGATAAAAGATGCATTGAATACTT
GCTTTAGAGAGCTATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(65-221)

Subunit ChlI of Mg-chelatase (ChlI)

(346-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

69.651

100

0.697
  radA Streptococcus pneumoniae Rx1

62.5

99.563

0.622
  radA Streptococcus pneumoniae D39

62.5

99.563

0.622
  radA Streptococcus pneumoniae R6

62.5

99.563

0.622
  radA Streptococcus pneumoniae TIGR4

62.5

99.563

0.622
  radA Streptococcus mitis NCTC 12261

62.5

99.563

0.622
  radA Streptococcus mitis SK321

62.5

99.563

0.622

Multiple sequence alignment