Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AB9L17_RS15200 Genome accession   NZ_CP168124
Coordinates   2959911..2961602 (-) Length   563 a.a.
NCBI ID   WP_375199357.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2954911..2966602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS15170 (AB9L17_15175) - 2955946..2956140 (-) 195 WP_223553393.1 hypothetical protein -
  AB9L17_RS15175 (AB9L17_15180) - 2956232..2956609 (-) 378 WP_068984756.1 PH domain-containing protein -
  AB9L17_RS15180 (AB9L17_15185) - 2956754..2956894 (-) 141 WP_375199355.1 hypothetical protein -
  AB9L17_RS15185 - 2957009..2957215 (-) 207 WP_375199356.1 hypothetical protein -
  AB9L17_RS15190 (AB9L17_15195) spo0A 2957693..2958484 (-) 792 WP_068984758.1 sporulation transcription factor Spo0A Regulator
  AB9L17_RS15195 (AB9L17_15200) - 2958841..2959788 (-) 948 WP_068984759.1 SpoIVB peptidase S55 domain-containing protein -
  AB9L17_RS15200 (AB9L17_15205) recN 2959911..2961602 (-) 1692 WP_375199357.1 DNA repair protein RecN Machinery gene
  AB9L17_RS15205 (AB9L17_15210) ahrC 2961638..2962087 (-) 450 WP_054612951.1 transcriptional regulator AhrC/ArgR -
  AB9L17_RS15210 (AB9L17_15215) - 2962188..2963006 (-) 819 WP_375199358.1 TlyA family RNA methyltransferase -
  AB9L17_RS15215 (AB9L17_15220) dxs 2963006..2964907 (-) 1902 WP_068984762.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AB9L17_RS15220 (AB9L17_15225) - 2965072..2965953 (-) 882 WP_223553428.1 polyprenyl synthetase family protein -
  AB9L17_RS15225 (AB9L17_15230) xseB 2965957..2966190 (-) 234 WP_053597070.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63239.91 Da        Isoelectric Point: 4.6644

>NTDB_id=1042422 AB9L17_RS15200 WP_375199357.1 2959911..2961602(-) (recN) [Bacillus sp. RS11]
MLRELSIRNFAIIEDLTVSFSGGLTVLTGETGAGKSIIIDAVHLLAGGRGNSEFIRHGAKKAELGGLFQISSSGHPVYKK
LEDAGIEIEEDTIILRRDLNDSGKSVCRVNGKLVPLSVLREIGASLIDIHGQHENQELMDEKQHIYLLDHFAEEQLTPIQ
DLYGSQYDEYRSLKKELASISIDEQLMAQRIDLYQFQMKELEDAKLKLGEEDELLDERRRLMNFNKIFERSNAAYEAIQG
ESKGLDWIGNAMGALEDAANVDEQFKEASESVTTAFYALQDAAYQVKNVLDELEFDPARLNEVEQRLALLQNLKRKYGST
IEEILAYYDKIKTELNELLNRDEILQVKEQKLLKMEAVLNELAAELSTVRKAAAHNLSEAIMAELRELHMEKAKFIVNFD
ELPYFDANGKDQVIFYISTNVGEPPKSLPKIASGGELSRMMLALKTIFSSSNGITSIIFDEVDTGVSGRVAQAIAEKIAA
ISINSQVLCISHLPQVAAMADHHYFIKKEVEHDRTFTSLLEIDTDARIEEVSRMISGAEITELTLQHATELLNMANERKK
QMR

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=1042422 AB9L17_RS15200 WP_375199357.1 2959911..2961602(-) (recN) [Bacillus sp. RS11]
GTGTTAAGAGAGCTTAGTATTCGAAACTTTGCCATTATTGAGGATTTAACAGTTAGCTTTTCAGGTGGTTTAACTGTTTT
AACAGGTGAAACAGGTGCAGGAAAATCAATTATTATAGATGCAGTGCATTTACTTGCTGGCGGCCGAGGGAATTCTGAAT
TTATTCGTCATGGAGCTAAAAAGGCTGAATTAGGTGGTTTATTTCAAATTTCGAGTTCTGGGCATCCTGTTTATAAGAAA
CTTGAAGATGCAGGCATTGAAATTGAAGAAGATACGATTATTTTGCGCCGTGATTTAAATGATTCTGGTAAAAGTGTTTG
TCGTGTAAACGGTAAGCTTGTGCCATTGTCTGTACTACGTGAGATTGGAGCTAGCCTCATCGATATTCATGGACAGCATG
AAAACCAAGAACTCATGGATGAGAAACAGCATATCTATTTGCTTGACCACTTTGCCGAGGAACAACTTACACCAATTCAA
GACTTGTACGGTTCCCAGTATGATGAATATCGTTCACTTAAAAAAGAATTAGCTTCGATTTCGATTGATGAACAGTTAAT
GGCACAGCGTATTGATTTGTACCAGTTCCAAATGAAAGAGCTAGAGGATGCCAAATTAAAGCTTGGCGAGGAAGATGAGC
TTCTTGATGAACGTCGTCGTCTTATGAATTTCAATAAGATTTTTGAACGTTCAAATGCAGCATATGAAGCTATTCAAGGT
GAATCAAAGGGCCTTGACTGGATTGGCAATGCAATGGGCGCCTTAGAAGATGCTGCAAACGTTGACGAGCAATTTAAAGA
GGCTTCAGAATCTGTCACTACTGCATTTTATGCATTACAGGATGCAGCTTACCAAGTTAAAAATGTGTTAGATGAATTAG
AATTTGATCCAGCACGTTTAAATGAGGTGGAGCAACGTTTAGCCTTACTACAAAATTTGAAGCGCAAATATGGTTCAACA
ATCGAAGAGATATTAGCGTATTATGATAAAATTAAAACAGAGCTAAATGAGCTCTTAAATCGCGATGAAATTTTGCAAGT
AAAAGAACAAAAATTACTGAAAATGGAAGCGGTGCTAAATGAGCTTGCTGCAGAACTTTCTACTGTTCGAAAGGCTGCTG
CACATAATTTAAGTGAAGCTATTATGGCTGAACTACGTGAATTACATATGGAAAAAGCAAAATTTATTGTTAATTTTGAT
GAGTTGCCTTATTTTGATGCGAATGGTAAAGACCAAGTAATTTTCTATATTTCAACGAATGTAGGAGAGCCACCAAAATC
TTTACCGAAAATTGCTTCTGGTGGAGAGTTATCGCGAATGATGCTTGCACTAAAGACGATTTTCTCTTCCTCTAATGGCA
TAACGTCCATTATTTTTGATGAGGTAGATACAGGTGTAAGCGGTCGTGTAGCGCAAGCAATTGCAGAAAAAATTGCAGCA
ATATCCATCAACTCTCAAGTTTTGTGTATTTCGCATTTACCACAAGTGGCTGCGATGGCAGATCATCATTATTTTATTAA
AAAAGAAGTCGAACATGATCGAACATTTACGTCATTGTTGGAAATAGATACAGATGCACGTATTGAAGAAGTAAGCCGGA
TGATATCTGGAGCAGAAATTACAGAGTTAACTTTGCAGCACGCTACAGAGCTGTTAAATATGGCTAATGAACGAAAAAAA
CAAATGAGATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-509)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

53.136

100

0.542

Multiple sequence alignment