Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB9L17_RS15190 Genome accession   NZ_CP168124
Coordinates   2957693..2958484 (-) Length   263 a.a.
NCBI ID   WP_068984758.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2952693..2963484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS15155 (AB9L17_15160) - 2952812..2953048 (+) 237 WP_068984752.1 DUF2627 domain-containing protein -
  AB9L17_RS15160 (AB9L17_15165) - 2953233..2953958 (-) 726 WP_068984753.1 glycerophosphodiester phosphodiesterase -
  AB9L17_RS15165 (AB9L17_15170) - 2953951..2955522 (-) 1572 WP_068984754.1 DUF342 domain-containing protein -
  AB9L17_RS15170 (AB9L17_15175) - 2955946..2956140 (-) 195 WP_223553393.1 hypothetical protein -
  AB9L17_RS15175 (AB9L17_15180) - 2956232..2956609 (-) 378 WP_068984756.1 PH domain-containing protein -
  AB9L17_RS15180 (AB9L17_15185) - 2956754..2956894 (-) 141 WP_375199355.1 hypothetical protein -
  AB9L17_RS15185 - 2957009..2957215 (-) 207 WP_375199356.1 hypothetical protein -
  AB9L17_RS15190 (AB9L17_15195) spo0A 2957693..2958484 (-) 792 WP_068984758.1 sporulation transcription factor Spo0A Regulator
  AB9L17_RS15195 (AB9L17_15200) - 2958841..2959788 (-) 948 WP_068984759.1 SpoIVB peptidase S55 domain-containing protein -
  AB9L17_RS15200 (AB9L17_15205) recN 2959911..2961602 (-) 1692 WP_375199357.1 DNA repair protein RecN Machinery gene
  AB9L17_RS15205 (AB9L17_15210) ahrC 2961638..2962087 (-) 450 WP_054612951.1 transcriptional regulator AhrC/ArgR -
  AB9L17_RS15210 (AB9L17_15215) - 2962188..2963006 (-) 819 WP_375199358.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29650.58 Da        Isoelectric Point: 6.3874

>NTDB_id=1042421 AB9L17_RS15190 WP_068984758.1 2957693..2958484(-) (spo0A) [Bacillus sp. RS11]
MTKVKVAIADDNRELLKTMEQYFQGHPEIEIIATASNGKVCLQMLEEFKPDILLLDIIMPHLDGLAVLESMYQNEQMSSV
QVIMLTAFGQEDVMKQAVDLGASYFMLKPFEFDQLVQKILNCAGQKATLPKKTSVLQPAAPQKLNQHQLDSTITAIIKEI
GVPAHIKGYSYLREAIQMVFEDIELLGSVTKILYPEIAKKFNTTPSRVERAIRHAIEVAWNRGNYESISSMFGYTVHHLK
SKPTNSEFIAMIADKIRIDMMAS

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1042421 AB9L17_RS15190 WP_068984758.1 2957693..2958484(-) (spo0A) [Bacillus sp. RS11]
ATGACAAAGGTAAAAGTAGCAATTGCAGATGATAATCGTGAGTTATTGAAAACGATGGAGCAGTATTTTCAAGGGCATCC
AGAAATTGAAATAATTGCAACTGCTTCAAATGGTAAAGTTTGTTTGCAAATGTTGGAGGAATTTAAACCAGATATTTTGC
TGCTAGATATTATCATGCCGCATCTTGACGGGTTAGCTGTATTGGAGTCAATGTATCAAAATGAACAAATGTCATCTGTT
CAAGTAATAATGTTAACTGCTTTTGGTCAAGAAGATGTCATGAAACAGGCTGTAGACTTAGGTGCGTCCTATTTTATGCT
TAAGCCATTTGAATTTGATCAATTGGTTCAAAAGATTTTAAACTGTGCAGGACAGAAGGCAACACTTCCGAAAAAGACAA
GTGTTTTACAACCGGCAGCACCTCAAAAATTAAATCAACATCAATTGGATAGCACGATCACAGCTATTATTAAGGAAATC
GGCGTTCCTGCGCATATTAAAGGATACTCTTATTTGCGAGAGGCTATTCAGATGGTGTTCGAAGATATCGAGTTATTAGG
CTCTGTGACGAAAATTTTATATCCAGAAATCGCTAAAAAATTCAATACAACTCCATCACGAGTTGAACGCGCGATTCGTC
ATGCCATTGAGGTCGCATGGAATCGTGGCAATTATGAATCGATTTCGTCGATGTTTGGTTATACCGTACATCATTTAAAG
TCGAAGCCGACAAATAGTGAATTTATCGCCATGATTGCGGACAAGATTCGCATCGACATGATGGCTAGTTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(153-256)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

60

100

0.616

Multiple sequence alignment