Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AB9L17_RS03915 Genome accession   NZ_CP168124
Coordinates   801639..803765 (+) Length   708 a.a.
NCBI ID   WP_083226903.1    Uniprot ID   -
Organism   Bacillus sp. RS11     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 796639..808765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB9L17_RS03895 (AB9L17_03895) - 797763..798572 (-) 810 WP_375200120.1 Cof-type HAD-IIB family hydrolase -
  AB9L17_RS03900 (AB9L17_03900) - 798694..799458 (+) 765 WP_068986919.1 prolyl oligopeptidase family serine peptidase -
  AB9L17_RS03905 (AB9L17_03905) - 799512..799820 (+) 309 WP_068986920.1 metal-sulfur cluster assembly factor -
  AB9L17_RS03910 (AB9L17_03910) - 800681..801367 (-) 687 WP_375200121.1 Crp/Fnr family transcriptional regulator -
  AB9L17_RS03915 (AB9L17_03915) clpC 801639..803765 (+) 2127 WP_083226903.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AB9L17_RS03920 (AB9L17_03920) - 803818..804012 (-) 195 WP_068983461.1 YjzD family protein -
  AB9L17_RS03925 (AB9L17_03925) - 804443..804814 (+) 372 WP_375200122.1 hypothetical protein -
  AB9L17_RS03930 (AB9L17_03930) - 805552..806490 (+) 939 WP_375200123.1 beta-ketoacyl-ACP synthase III -
  AB9L17_RS03935 (AB9L17_03935) fabF 806521..807762 (+) 1242 WP_068983458.1 beta-ketoacyl-ACP synthase II -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 80187.83 Da        Isoelectric Point: 5.2101

>NTDB_id=1042405 AB9L17_RS03915 WP_083226903.1 801639..803765(+) (clpC) [Bacillus sp. RS11]
MQFQQTDNKKPLEQFGRNLIEEVKNGKMDPVIGRDEEIRNVIRILTRKTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVP
EGLKDCVLYELDMSALIAGASYRGQFEERLKGVLKEVKESEGRIILFIDEIHTIVGAGKTDGAMDAGNMLKPMLARGELH
CIGATTLDEYRMYIEKDPALERRFQQVLVREPSIEDTVSILRGLKERFELHHAVRIHDRAIVAAAELSNRYITERFLPDK
AIDLIDEACAMIRTEIDSMPQELDAVTRRIMQLEIEEQALRKEKDEASKKRLEQLSEELTKLKDSSEGMRKQWESEKAAL
QGIQKKRETLNKYRRDLDEAESKYDLNKAAELRHGKIPTLEKDIQEMEKQLENGIESRILREEVTADEIASIVSRWTGIP
VTKLVEGEREKLLRLKDTLHERVVGQDNAVQLVTEAVWRARAGIKDPHRPIGSFLFLGPTGVGKTELAKALAAQLFDSED
HFIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSVVLLDEIEKAHPDVANILLQILDDGRITDSQGRMV
NFTNTVVILTSNIGSSYLMEAKEDDGAVEDLVMTALRQHFKPELLNRMDDIIMFHALSGEHFTAIAWKYVEQLVKRVAEQ
DIALQVEQGVIDWVVDQGADAQFGARPLKRFVQRYIETAVAKELLRGEVLPGETLHIRMHDGQCVVEK

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=1042405 AB9L17_RS03915 WP_083226903.1 801639..803765(+) (clpC) [Bacillus sp. RS11]
ATGCAATTTCAACAAACAGATAATAAAAAACCATTAGAGCAATTTGGACGTAATTTAATTGAAGAAGTTAAAAACGGTAA
AATGGACCCGGTTATCGGTCGTGATGAAGAAATTCGTAATGTTATTCGTATTTTAACGCGTAAAACGAAAAATAATCCTG
TCTTAATCGGTGAGCCAGGCGTCGGTAAAACAGCAATTGTAGAAGGGTTAGCTCAACGTATTGTAAAAGGGGATGTACCC
GAGGGATTAAAAGATTGCGTATTATACGAGCTTGATATGAGTGCTTTAATAGCAGGTGCAAGTTATCGAGGTCAATTTGA
AGAACGCTTAAAAGGTGTACTTAAAGAAGTGAAGGAATCGGAAGGGCGTATCATTTTATTTATTGATGAAATTCATACAA
TTGTTGGTGCAGGTAAAACGGATGGTGCAATGGATGCTGGGAATATGTTAAAGCCAATGCTTGCACGAGGTGAGTTACAT
TGTATCGGTGCTACAACATTAGATGAATACCGTATGTATATTGAAAAAGATCCTGCTTTAGAGCGTCGTTTTCAACAAGT
GCTTGTGCGTGAGCCATCTATTGAGGATACAGTTTCCATTTTACGTGGCTTAAAAGAGCGCTTTGAGTTACATCATGCGG
TACGTATTCATGACCGTGCGATCGTAGCGGCAGCAGAGCTTTCGAACCGCTATATTACAGAGCGCTTCTTGCCTGATAAA
GCCATTGATTTAATCGATGAAGCATGTGCCATGATTCGAACAGAGATTGATTCTATGCCACAGGAATTGGATGCAGTAAC
ACGCCGTATTATGCAGCTCGAAATTGAGGAACAAGCATTGCGTAAAGAAAAGGATGAGGCAAGTAAAAAGCGTCTCGAGC
AATTAAGTGAGGAATTAACAAAGCTAAAAGATTCCTCAGAAGGCATGCGGAAACAATGGGAAAGCGAAAAAGCAGCGTTA
CAGGGCATTCAGAAAAAACGAGAAACGCTTAATAAATATCGTCGTGACTTAGATGAAGCAGAAAGTAAATATGATTTAAA
TAAAGCAGCCGAACTACGTCATGGGAAAATTCCTACTCTTGAAAAGGATATACAAGAGATGGAGAAACAATTAGAGAATG
GCATAGAATCACGTATTTTACGTGAAGAGGTAACAGCTGATGAAATCGCATCTATTGTTTCACGCTGGACAGGAATACCT
GTAACAAAGTTAGTGGAGGGAGAGCGCGAAAAATTATTGCGCTTAAAAGATACATTGCATGAGCGAGTAGTTGGACAAGA
TAATGCTGTGCAACTTGTCACTGAAGCAGTATGGCGCGCTCGAGCTGGTATTAAAGATCCACATCGACCAATTGGTAGCT
TTTTATTCTTAGGACCAACCGGTGTTGGTAAAACAGAGCTTGCCAAGGCATTAGCGGCACAGCTGTTTGATTCCGAGGAT
CATTTTATTCGCATTGATATGAGTGAATATATGGAGAAACATAGCGTATCACGTCTTGTAGGGGCACCTCCAGGTTATGT
TGGTTATGAGGAAGGTGGACAATTAACGGAAGCTGTTCGCCGTAATCCATATTCAGTTGTATTACTAGATGAAATTGAAA
AGGCACACCCAGATGTCGCGAATATTTTACTACAAATTTTAGATGATGGCCGCATTACGGATAGTCAAGGTCGTATGGTC
AATTTTACGAACACAGTGGTTATTTTAACTTCTAACATTGGCTCAAGCTATTTAATGGAAGCAAAAGAAGACGATGGAGC
AGTTGAGGATTTAGTGATGACTGCACTGCGTCAGCACTTTAAACCAGAGCTGTTAAATCGTATGGATGATATTATTATGT
TCCACGCATTATCAGGTGAGCACTTTACAGCGATTGCTTGGAAATATGTTGAACAGCTTGTAAAACGTGTTGCAGAGCAA
GATATTGCTTTACAAGTAGAACAAGGTGTAATTGATTGGGTTGTAGACCAAGGAGCGGATGCTCAGTTTGGCGCAAGACC
ATTAAAACGCTTCGTACAACGTTATATTGAAACGGCAGTTGCAAAGGAATTGCTACGAGGTGAAGTATTACCAGGAGAAA
CATTGCATATTAGAATGCATGACGGTCAATGTGTTGTTGAAAAATAA

Domains

Predicted by InterproScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(54-188)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(617-697)

AAA lid domain (AAA_lid_9)

(193-295)

AAA domain (Cdc48 subfamily) (AAA_2)

(449-611)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Bacillus subtilis subsp. subtilis str. 168

50.282

100

0.504
  clpE Streptococcus mutans UA159

47.813

96.893

0.463
  clpC Lactococcus lactis subsp. cremoris KW2

48.373

95.48

0.462
  clpE Streptococcus pneumoniae Rx1

47.724

96.186

0.459
  clpE Streptococcus pneumoniae D39

47.724

96.186

0.459
  clpE Streptococcus pneumoniae R6

47.724

96.186

0.459
  clpE Streptococcus pneumoniae TIGR4

47.654

96.328

0.459
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

45.05

98.446

0.444

Multiple sequence alignment